RLG00000001888

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013550
Physical Location & Seq
Forward (+)
22561938 .. 22563852
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001888

Sequence Viewer

Length: 609 bp
ATGTCGAAGTCCAACTCAAGTAGCCACTGTAGCAAATGCCAAACCTATCCCACTATCGGCCTAATCGAGTCTCTCACTCTCTCTCATTCTCTCAAACTCTCAAAGACTCAAACATGGCTGCCTCTCTCTCACAGAGTCTCTCTTAAACTTCTCCGCCGCCAACCACCACATCCGGCGGTTTTGGACCAGCAGAGACTTGCGACTACTCCTTCAGAGTCCAGACCAGCAAACCTATCTTCTCCGCCGCAGATCGAGACTTATTCCGATAGGCTTGCGACTAGTCGGACCTTAGAGGCTCAGATCGAGACTTGTTCCGATAGGCTTGCAACGAGCGACGTCGGCGTAGATGGTGTGGACTTCGTTCCCAGTTTTCGTTATGCATCCACCGCCGACGCAGAAGCAATTTTGTGCGAGCCTTGCAATGGCAAAGGGTGGTTACTCTGTGATTTCTGTGAAGGCCAGAAAACCAATGTGAAATCTAACTCTAATAGGACCTATCGGCGATGCCCAACTTGTAGAGCCATTGGGTATGTGCTGTGTTCAAAGTGTAAGGTTTTCAAATGTGTCACATTCCCAAATTACAATGATGGTGAAGAGTTGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.41

Weight (kDa)

8.59

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AciI CCGC 6 cut(s) 154, 157, 176, 242, 245, 387
AcuI CTGAAG 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 56, 422
AgsI TTSAA 2 cut(s) 543, 559
AhlI ACTAGT 1 cut(s) 278
Alw26I GTCTC 5 cut(s) 75, 142, 187, 248, 299
AoxI GGCC 2 cut(s) 58, 457
ApeKI GCWGC 1 cut(s) 118
AspS9I GGNCC 3 cut(s) 184, 285, 492
AsuHPI GGTGA 1 cut(s) 602
AvaII GGWCC 3 cut(s) 184, 285, 492
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 341, 581
BcgI CGANNNNNNTGC 4 cut(s) 254, 288, 305, 339
BcoDI GTCTC 5 cut(s) 75, 142, 187, 248, 299
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 3 cut(s) 119, 157, 245
BlsI GCNGC 3 cut(s) 120, 158, 246
Bme18I GGWCC 3 cut(s) 184, 285, 492
BmgT120I GGNCC 3 cut(s) 184, 285, 492
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 389, 494
BmuI ACTGGG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 336
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 422
Bse1I ACTGG 1 cut(s) 366
Bse3DI GCAATG 1 cut(s) 427
BseGI GGATG 2 cut(s) 169, 380
BseLI CCNNNNNNNGG 2 cut(s) 56, 422
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 2 cut(s) 60, 459
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 56, 422
BsmAI GTCTC 5 cut(s) 75, 142, 187, 248, 299
BsnI GGCC 2 cut(s) 60, 459
Bsp143I GATC 2 cut(s) 249, 300
BspACI CCGC 6 cut(s) 154, 157, 176, 242, 245, 387
BspANI GGCC 2 cut(s) 60, 459
BspCNI CTCAG 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 366
BssMI GATC 2 cut(s) 249, 300
BssNI GRCGYC 1 cut(s) 336
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 588
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 273, 324, 413
BstDEI CTNAG 2 cut(s) 289, 297
BstF5I GGATG 2 cut(s) 169, 380
BstKTI GATC 2 cut(s) 252, 303
BstMAI GTCTC 5 cut(s) 75, 142, 187, 248, 299
BstMBI GATC 2 cut(s) 249, 300
BstMWI GCNNNNNNNGC 4 cut(s) 30, 339, 386, 417
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 105
BsuRI GGCC 2 cut(s) 60, 459
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 2 cut(s) 169, 380
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 273, 324, 413
Cfr13I GGNCC 3 cut(s) 184, 285, 492
CseI GACGC 1 cut(s) 401
CviAII CATG 1 cut(s) 114
CviJI RGCY 9 cut(s) 24, 60, 118, 271, 296, 322, 415, 459, 521
CviKI_1 RGCY 9 cut(s) 24, 60, 118, 271, 296, 322, 415, 459, 521
DdeI CTNAG 2 cut(s) 289, 297
DpnI GATC 2 cut(s) 251, 302
DpnII GATC 2 cut(s) 249, 300
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 2 cut(s) 143, 231
Eco47I GGWCC 3 cut(s) 184, 285, 492
Eco57I CTGAAG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 492
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 1 cut(s) 117
FaiI YATR 3 cut(s) 115, 378, 531
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 119, 157, 245
FokI GGATG 2 cut(s) 156, 367
Fsp4HI GCNGC 3 cut(s) 119, 157, 245
FspBI CTAG 1 cut(s) 279
GluI GCNGC 3 cut(s) 119, 157, 245
HaeIII GGCC 2 cut(s) 60, 459
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 1 cut(s) 117
HinfI GANTC 4 cut(s) 68, 106, 135, 215
HpaII CCGG 1 cut(s) 173
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 5 cut(s) 214, 265, 285, 300, 316
Hpy188III TCNNGA 3 cut(s) 219, 253, 304
Hpy8I GTNNAC 1 cut(s) 355
Hpy99I CGWCG 3 cut(s) 338, 341, 395
HpyAV CCTTC 2 cut(s) 219, 449
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 3 cut(s) 326, 380, 420
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 339, 386, 417
HpyF3I CTNAG 2 cut(s) 289, 297
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 2 cut(s) 249, 300
LpnPI CCDG 6 cut(s) 186, 200, 232, 237, 379, 473
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 2 cut(s) 389, 494
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 435, 565
MalI GATC 2 cut(s) 251, 302
MboI GATC 2 cut(s) 249, 300
MboII GAAGA 2 cut(s) 228, 605
MluCI AATT 2 cut(s) 402, 577
MlyI GAGTC 4 cut(s) 77, 100, 144, 224
MmeI TCCRAC 2 cut(s) 36, 263
MnlI CCTC 2 cut(s) 132, 286
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 1 cut(s) 144
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 4 cut(s) 30, 339, 386, 417
NdeII GATC 2 cut(s) 249, 300
NlaIII CATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 565
NsiI ATGCAT 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 3 cut(s) 120, 158, 246
PleI GAGTC 4 cut(s) 76, 100, 143, 223
PpsI GAGTC 4 cut(s) 76, 100, 143, 223
PpuMI RGGWCCY 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 492
PspPI GGNCC 3 cut(s) 184, 285, 492
PspPPI RGGWCCY 1 cut(s) 492
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 3 cut(s) 119, 157, 245
Sau3AI GATC 2 cut(s) 249, 300
Sau96I GGNCC 3 cut(s) 184, 285, 492
SchI GAGTC 4 cut(s) 77, 100, 144, 224
SetI ASST 6 cut(s) 47, 234, 290, 339, 497, 555
SfaNI GCATC 2 cut(s) 389, 494
SfcI CTRYAG 1 cut(s) 28
SinI GGWCC 3 cut(s) 184, 285, 492
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 2 cut(s) 402, 577
SsiI CCGC 6 cut(s) 154, 157, 176, 242, 245, 387
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 339
TaqI TCGA 4 cut(s) 5, 66, 252, 303
TasI AATT 2 cut(s) 402, 577
TauI GCSGC 2 cut(s) 159, 247
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 32
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 565
TspRI CASTG 1 cut(s) 32
VpaK11BI GGWCC 3 cut(s) 184, 285, 492
XspI CTAG 1 cut(s) 279
ZraI GACGTC 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.