RLG00000010890

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013550
Physical Location & Seq
Reverse (-)
5101226 .. 5101967
742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010890

Sequence Viewer

Length: 483 bp
ATGCAAGGAGCTCCGGAAGAGAGGGAACACGAAGAAAATCGCCCCCGGAGAAACAAGTTTGCAAGGAGAAATGGCAAGTCCGGCGACACTCTGCTCTGTTCTGAGGAACTCATTCCTACTCCAATGGCGTCGATGATGATGATGTCTATCTCCCCCTGGAAACTCAGCTCTTTACGGACTATGGCACTGCCACCGCCAACGACGAGTCGTTTTCCGAAGCGCGCGCAGTGCTCACCAATCAAGCAAGAACCAGAGGTTGATTCTTCTTCTGCAGCAATTTTGTGCGAGCCTTGCAATGGCAAAGGGTGGTTACTCTGTGATTTCTGTAAAGGACAGAAAACCAATGTGAAATCTGCCTCTAATAGGACCTATCGGCGATGCCCAACTTGTAGAGCCATTGGATATGTGCTGTGTTCCAAGTGCAAGGTCTTCAAATGTGTCACATTTCCAAATTACAATGATGGTGAAGAGTTGTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

9.12

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 222, 224
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 296, 363
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 2 cut(s) 11, 168
AluI AGCT 2 cut(s) 11, 168
Alw21I GWGCWC 2 cut(s) 13, 233
Aor13HI TCCGGA 1 cut(s) 13
ApeKI GCWGC 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 3 cut(s) 222, 224, 226
AspS9I GGNCC 1 cut(s) 366
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 225, 476
AvaII GGWCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 421
Bbv12I GWGCWC 2 cut(s) 13, 233
BbvI GCAGC 1 cut(s) 284
BccI CCATC 1 cut(s) 455
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 2 cut(s) 46, 157
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmrFI CCNGG 2 cut(s) 46, 157
BmsI GCATC 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 44, 155
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 363
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 146
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 44, 155
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 296, 363
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 2 cut(s) 93, 178
BsePI GCGCGC 2 cut(s) 220, 222
BseXI GCAGC 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 222, 224
BsiHKAI GWGCWC 2 cut(s) 13, 233
BsiSI CCGG 3 cut(s) 14, 46, 81
BslI CCNNNNNNNGG 2 cut(s) 296, 363
Bsp1286I GDGCHC 2 cut(s) 13, 233
Bsp13I TCCGGA 1 cut(s) 13
BspACI CCGC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 94, 177
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 2 cut(s) 222, 224
BspMAI CTGCAG 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 44, 155
BssHII GCGCGC 2 cut(s) 220, 222
BssNI GRCGYC 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 12, 462
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 3 cut(s) 222, 224, 287
BstDEI CTNAG 2 cut(s) 102, 164
BstENI CCTNNNNNAGG 1 cut(s) 361
BstFNI CGCG 2 cut(s) 222, 224
BstHHI GCGC 3 cut(s) 222, 224, 226
BstMWI GCNNNNNNNGC 3 cut(s) 81, 228, 291
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 2 cut(s) 44, 155
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 2 cut(s) 222, 224
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 391
BtsI GCAGTG 2 cut(s) 185, 233
BtsIMutI CAGTG 2 cut(s) 185, 233
Cac8I GCNNGC 3 cut(s) 222, 224, 287
CfoI GCGC 3 cut(s) 222, 224, 226
Cfr13I GGNCC 1 cut(s) 366
CseI GACGC 1 cut(s) 117
CviJI RGCY 4 cut(s) 11, 168, 289, 395
CviKI_1 RGCY 4 cut(s) 11, 168, 289, 395
DdeI CTNAG 2 cut(s) 102, 164
Eam1104I CTCTTC 2 cut(s) 12, 462
EarI CTCTTC 2 cut(s) 12, 462
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 366
EcoRII CCWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 13
FaiI YATR 2 cut(s) 182, 405
Fnu4HI GCNGC 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 273
GlaI GCGC 3 cut(s) 221, 223, 225
GluI GCNGC 1 cut(s) 273
HapII CCGG 3 cut(s) 14, 46, 81
HgaI GACGC 1 cut(s) 117
HhaI GCGC 3 cut(s) 222, 224, 226
Hin1I GRCGYC 1 cut(s) 128
Hin6I GCGC 3 cut(s) 220, 222, 224
HinP1I GCGC 3 cut(s) 220, 222, 224
HinfI GANTC 2 cut(s) 205, 260
HpaII CCGG 3 cut(s) 14, 46, 81
HphI GGTGA 2 cut(s) 225, 476
Hpy188I TCNGA 2 cut(s) 103, 216
Hpy188III TCNNGA 1 cut(s) 14
Hpy99I CGWCG 2 cut(s) 133, 205
HpyCH4V TGCA 5 cut(s) 4, 62, 272, 294, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 228, 291
HpyF3I CTNAG 2 cut(s) 102, 164
Hsp92I GRCGYC 1 cut(s) 128
HspAI GCGC 3 cut(s) 220, 222, 224
Kpn2I TCCGGA 1 cut(s) 13
LmnI GCTCC 2 cut(s) 8, 16
LpnPI CCDG 6 cut(s) 27, 59, 94, 142, 169, 264
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 2 cut(s) 309, 439
MboII GAAGA 6 cut(s) 29, 44, 255, 258, 421, 479
MhlI GDGCHC 2 cut(s) 13, 233
MluCI AATT 2 cut(s) 276, 451
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 4 cut(s) 15, 97, 247, 367
MroI TCCGGA 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 111
MspI CCGG 3 cut(s) 14, 46, 81
MspR9I CCNGG 2 cut(s) 46, 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 2 cut(s) 222, 224
MwoI GCNNNNNNNGC 3 cut(s) 81, 228, 291
NciI CCSGG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 439
PauI GCGCGC 2 cut(s) 220, 222
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspPI GGNCC 1 cut(s) 366
PspPPI RGGWCCY 1 cut(s) 366
PstI CTGCAG 1 cut(s) 274
PteI GCGCGC 2 cut(s) 220, 222
SacI GAGCTC 1 cut(s) 13
SatI GCNGC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 2 cut(s) 46, 157
SduI GDGCHC 2 cut(s) 13, 233
SetI ASST 5 cut(s) 13, 170, 258, 371, 429
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 366
Sse9I AATT 2 cut(s) 276, 451
SsiI CCGC 1 cut(s) 194
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 44, 155
TaqI TCGA 1 cut(s) 131
TasI AATT 2 cut(s) 276, 451
TfiI GAWTC 1 cut(s) 260
TscAI CASTG 2 cut(s) 192, 233
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 439
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 2 cut(s) 192, 233
VpaK11BI GGWCC 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.