RLG00000021566

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013550
Physical Location & Seq
Forward (+)
76427979 .. 76430838
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021566

Sequence Viewer

Length: 657 bp
ATGATCGCTGCGCTGCTGTCAAGGCCGACTTCATCTCCGACTTCAAACTTGGTGACAGATTTCAATCCAGAAAGGATTGGCGAAGGTGAAGACCATGGAGTTGGGGCTGGCGTCCTTGTTGGTGGCGCCGGAGACAAGTTTTCCTGTAGAAATGCGCCGACGTCGTTCTTAGTCTCTCTTAAACTTCTCCGCCGCCAGCCACCACATCCAGCGGTTTTGGACCAGCAGAGACTTGTGACTACTCCTTCAGAGTCCAGACCGGCAAACCTATCTTCTCCGCCGCAGATTGAGACTTATTTCGATAGGCTTGCGACGAGTCGGACCTTAGAGGCTCAGAATGAGACTTGTTCCGGTAGGCTTGCGACGAGTCGGACCTCAGATCGAGACTTTCTTCGTTATGCATCCACCGCCGATGTAGAAGGTGAGGACCTCGATCCCGATTTTTGTTTGTTCTGGTCTTCTAGATTGGGTATGTGCTGTGTTCAAAGTATAAGGTTTTCAAATGTGTCACATTCCCAAATTGCAATGATGGTGAAGAGTTGTCTTTTTGAGCCTGAGCAGCTTCGTATTCACTTTTTCAGGATGATACTTGAAACAAATCCAACTATTATCGCAGGAAAGGTGACAACTCATAACATGGATGCTGATGCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

23.98

Weight (kDa)

5.73

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 125
AciI CCGC 6 cut(s) 190, 193, 212, 278, 281, 408
AclWI GGATC 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 3 cut(s) 111, 126, 161
AgsI TTSAA 5 cut(s) 45, 64, 485, 501, 593
AluBI AGCT 1 cut(s) 562
AluI AGCT 1 cut(s) 562
Alw26I GTCTC 6 cut(s) 126, 178, 223, 284, 335, 378
AlwI GGATC 1 cut(s) 428
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 8, 13, 559
AspLEI GCGC 3 cut(s) 13, 128, 157
AspS9I GGNCC 4 cut(s) 220, 321, 372, 427
AsuHPI GGTGA 5 cut(s) 64, 98, 434, 544, 634
AvaII GGWCC 4 cut(s) 220, 321, 372, 427
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 96, 450
BbvI GCAGC 1 cut(s) 571
BccI CCATC 1 cut(s) 523
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcoDI GTCTC 6 cut(s) 126, 178, 223, 284, 335, 378
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 5 cut(s) 9, 14, 193, 281, 560
BlsI GCNGC 5 cut(s) 10, 15, 194, 282, 561
Bme18I GGWCC 4 cut(s) 220, 321, 372, 427
BmgT120I GGNCC 4 cut(s) 220, 321, 372, 427
BmiI GGNNCC 1 cut(s) 127
BmsI GCATC 3 cut(s) 410, 631, 637
BpiI GAAGAC 2 cut(s) 96, 450
Bpu10I CCTNAGC 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 3 cut(s) 111, 126, 161
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bse118I RCCGGY 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 4 cut(s) 205, 401, 588, 646
BseJI GATNNNNATC 1 cut(s) 63
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 3 cut(s) 347, 390, 546
BseXI GCAGC 1 cut(s) 571
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 125
BsiSI CCGG 3 cut(s) 129, 260, 351
BsmAI GTCTC 6 cut(s) 126, 178, 223, 284, 335, 378
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 3, 379, 433
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 6 cut(s) 190, 193, 212, 278, 281, 408
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 3 cut(s) 346, 389, 547
BspLI GGNNCC 1 cut(s) 127
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 3 cut(s) 3, 379, 433
BssNI GRCGYC 3 cut(s) 111, 126, 161
BssT1I CCWWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 530
BstACI GRCGYC 3 cut(s) 111, 126, 161
BstC8I GCNNGC 4 cut(s) 109, 197, 309, 360
BstDEI CTNAG 5 cut(s) 169, 325, 333, 376, 555
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 4 cut(s) 205, 401, 588, 646
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 13, 128, 157
BstKTI GATC 3 cut(s) 6, 382, 436
BstMAI GTCTC 6 cut(s) 126, 178, 223, 284, 335, 378
BstMBI GATC 3 cut(s) 3, 379, 433
BstMWI GCNNNNNNNGC 3 cut(s) 22, 407, 559
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 571
BstV2I GAAGAC 2 cut(s) 96, 450
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 4 cut(s) 205, 401, 588, 646
Cac8I GCNNGC 4 cut(s) 109, 197, 309, 360
CfoI GCGC 3 cut(s) 13, 128, 157
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 4 cut(s) 220, 321, 372, 427
CseI GACGC 1 cut(s) 100
CviAII CATG 3 cut(s) 95, 637, 654
CviJI RGCY 8 cut(s) 25, 107, 199, 307, 332, 358, 553, 562
CviKI_1 RGCY 8 cut(s) 25, 107, 199, 307, 332, 358, 553, 562
DdeI CTNAG 5 cut(s) 169, 325, 333, 376, 555
DinI GGCGCC 1 cut(s) 127
DpnI GATC 3 cut(s) 5, 381, 435
DpnII GATC 3 cut(s) 3, 379, 433
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 2 cut(s) 179, 267
Eco130I CCWWGG 1 cut(s) 94
Eco47I GGWCC 4 cut(s) 220, 321, 372, 427
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 403
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 3 cut(s) 98, 640, 657
FaiI YATR 7 cut(s) 96, 399, 473, 491, 633, 638, 655
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FatI CATG 3 cut(s) 94, 636, 653
Fnu4HI GCNGC 5 cut(s) 9, 14, 193, 281, 560
FokI GGATG 4 cut(s) 192, 388, 595, 653
Fsp4HI GCNGC 5 cut(s) 9, 14, 193, 281, 560
FspBI CTAG 1 cut(s) 462
GlaI GCGC 3 cut(s) 12, 127, 156
GluI GCNGC 5 cut(s) 9, 14, 193, 281, 560
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 1 cut(s) 25
HapII CCGG 3 cut(s) 129, 260, 351
HgaI GACGC 1 cut(s) 100
HhaI GCGC 3 cut(s) 13, 128, 157
Hin1I GRCGYC 3 cut(s) 111, 126, 161
Hin1II CATG 3 cut(s) 98, 640, 657
Hin6I GCGC 3 cut(s) 11, 126, 155
HinP1I GCGC 3 cut(s) 11, 126, 155
HinfI GANTC 3 cut(s) 251, 316, 367
HpaII CCGG 3 cut(s) 129, 260, 351
HphI GGTGA 5 cut(s) 64, 98, 434, 544, 634
Hpy188I TCNGA 6 cut(s) 39, 250, 321, 336, 372, 379
Hpy188III TCNNGA 6 cut(s) 68, 255, 383, 437, 462, 580
Hpy99I CGWCG 4 cut(s) 163, 166, 316, 367
HpyAV CCTTC 3 cut(s) 77, 255, 413
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 3 cut(s) 401, 524, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 407, 559
HpyF3I CTNAG 5 cut(s) 169, 325, 333, 376, 555
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 3 cut(s) 111, 126, 161
Hsp92II CATG 3 cut(s) 98, 640, 657
HspAI GCGC 3 cut(s) 11, 126, 155
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 3, 379, 433
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 3 cut(s) 410, 631, 637
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 4 cut(s) 52, 235, 507, 622
MalI GATC 3 cut(s) 5, 381, 435
MboI GATC 3 cut(s) 3, 379, 433
MboII GAAGA 5 cut(s) 101, 264, 383, 450, 547
MluCI AATT 1 cut(s) 519
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 3 cut(s) 260, 325, 376
MmeI TCCRAC 4 cut(s) 62, 299, 350, 626
MnlI CCTC 4 cut(s) 322, 385, 418, 440
Mph1103I ATGCAT 1 cut(s) 403
MseI TTAA 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 129, 260, 351
MwoI GCNNNNNNNGC 3 cut(s) 22, 407, 559
NarI GGCGCC 1 cut(s) 126
NcoI CCATGG 1 cut(s) 94
NdeII GATC 3 cut(s) 3, 379, 433
NlaIII CATG 3 cut(s) 98, 640, 657
NlaIV GGNNCC 1 cut(s) 127
NmuCI GTSAC 4 cut(s) 52, 235, 507, 622
NsiI ATGCAT 1 cut(s) 403
PkrI GCNGC 5 cut(s) 10, 15, 194, 282, 561
PleI GAGTC 3 cut(s) 259, 324, 375
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 3 cut(s) 259, 324, 375
PpuMI RGGWCCY 1 cut(s) 427
Psp5II RGGWCCY 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 4 cut(s) 220, 321, 372, 427
PspPPI RGGWCCY 1 cut(s) 427
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 5 cut(s) 9, 14, 193, 281, 560
Sau3AI GATC 3 cut(s) 3, 379, 433
Sau96I GGNCC 4 cut(s) 220, 321, 372, 427
SchI GAGTC 3 cut(s) 260, 325, 376
SfaNI GCATC 3 cut(s) 410, 631, 637
SfcI CTRYAG 1 cut(s) 145
SfoI GGCGCC 1 cut(s) 127
SinI GGWCC 4 cut(s) 220, 321, 372, 427
Sse9I AATT 1 cut(s) 519
SsiI CCGC 6 cut(s) 190, 193, 212, 278, 281, 408
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 1 cut(s) 462
StyI CCWWGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 164
TaqI TCGA 3 cut(s) 300, 382, 432
TasI AATT 1 cut(s) 519
TauI GCSGC 2 cut(s) 195, 283
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseFI GTSAC 4 cut(s) 52, 235, 507, 622
TseI GCWGC 3 cut(s) 8, 13, 559
Tsp45I GTSAC 4 cut(s) 52, 235, 507, 622
TspDTI ATGAA 1 cut(s) 21
VpaK11BI GGWCC 4 cut(s) 220, 321, 372, 427
XbaI TCTAGA 1 cut(s) 461
XspI CTAG 1 cut(s) 462
ZraI GACGTC 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.