transposition, RNA-mediated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24395 |
| fragaria_vesca | FvH4_2g36440 |
| malus_domestica | MD08G1124100.v1.1 MD15G1102800.v1.1 |
| prunus_persica | Prupe.1G455800_v2.0.a1 |
| pyrus_communis | pycom08g10290 |
| rosa_chinensis | RchiOBHm_Chr6g0305461 |
| rosa_laevigata | RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261 |
| rosa_multiflora | Rmu_sc0007817.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00162800 |
| rosa_samantha | Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900 |
| rosa_wichuraiana | Rw6G039420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 191 |
| AfaI | GTAC | 1 cut(s) | 105 |
| AflIII | ACRYGT | 1 cut(s) | 74 |
| AgsI | TTSAA | 2 cut(s) | 288, 304 |
| AjiI | CACGTC | 1 cut(s) | 77 |
| AluBI | AGCT | 3 cut(s) | 34, 257, 266 |
| AluI | AGCT | 3 cut(s) | 34, 257, 266 |
| Alw26I | GTCTC | 1 cut(s) | 221 |
| AoxI | GGCC | 2 cut(s) | 159, 202 |
| ApoI | RAATTY | 1 cut(s) | 191 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 64, 96, 229, 261 |
| AsuHPI | GGTGA | 2 cut(s) | 149, 347 |
| BccI | CCATC | 2 cut(s) | 116, 326 |
| BcoDI | GTCTC | 1 cut(s) | 221 |
| BmgBI | CACGTC | 1 cut(s) | 77 |
| BmsI | GCATC | 1 cut(s) | 239 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| Bse3DI | GCAATG | 1 cut(s) | 172 |
| BseGI | GGATG | 1 cut(s) | 108 |
| BseMI | GCAATG | 1 cut(s) | 172 |
| BseMII | CTCAG | 2 cut(s) | 49, 216 |
| BseYI | CCCAGC | 1 cut(s) | 253 |
| BsgI | GTGCAG | 1 cut(s) | 78 |
| BshFI | GGCC | 2 cut(s) | 161, 204 |
| BsmAI | GTCTC | 1 cut(s) | 221 |
| BsnI | GGCC | 2 cut(s) | 161, 204 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| BspANI | GGCC | 2 cut(s) | 161, 204 |
| BspCNI | CTCAG | 2 cut(s) | 48, 217 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BsrDI | GCAATG | 1 cut(s) | 172 |
| Bst4CI | ACNGT | 1 cut(s) | 245 |
| BstC8I | GCNNGC | 3 cut(s) | 32, 93, 163 |
| BstDEI | CTNAG | 2 cut(s) | 35, 225 |
| BstF5I | GGATG | 1 cut(s) | 108 |
| BstMAI | GTCTC | 1 cut(s) | 221 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 162, 263 |
| BsuRI | GGCC | 2 cut(s) | 161, 204 |
| BtrI | CACGTC | 1 cut(s) | 77 |
| BtsCI | GGATG | 1 cut(s) | 108 |
| BtsI | GCAGTG | 1 cut(s) | 97 |
| BtsIMutI | CAGTG | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 3 cut(s) | 32, 93, 163 |
| Csp6I | GTAC | 1 cut(s) | 104 |
| CviJI | RGCY | 6 cut(s) | 34, 91, 161, 204, 257, 266 |
| CviKI_1 | RGCY | 6 cut(s) | 34, 91, 161, 204, 257, 266 |
| CviQI | GTAC | 1 cut(s) | 104 |
| DdeI | CTNAG | 2 cut(s) | 35, 225 |
| Eco147I | AGGCCT | 1 cut(s) | 161 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| FaiI | YATR | 1 cut(s) | 283 |
| FokI | GGATG | 1 cut(s) | 95 |
| GsaI | CCCAGC | 1 cut(s) | 257 |
| HaeIII | GGCC | 2 cut(s) | 161, 204 |
| HinfI | GANTC | 1 cut(s) | 237 |
| HphI | GGTGA | 2 cut(s) | 149, 347 |
| Hpy166II | GTNNAC | 1 cut(s) | 338 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy8I | GTNNAC | 1 cut(s) | 338 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 81, 249 |
| HpyCH4III | ACNGT | 1 cut(s) | 245 |
| HpyCH4IV | ACGT | 1 cut(s) | 76 |
| HpyCH4V | TGCA | 5 cut(s) | 30, 95, 165, 198, 294 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 162, 263 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 225 |
| HpySE526I | ACGT | 1 cut(s) | 76 |
| LpnPI | CCDG | 7 cut(s) | 40, 105, 144, 175, 218, 260, 267 |
| LweI | GCATC | 1 cut(s) | 239 |
| MaeII | ACGT | 1 cut(s) | 76 |
| MaeIII | GTNAC | 1 cut(s) | 310 |
| MluCI | AATT | 2 cut(s) | 191, 322 |
| MmeI | TCCRAC | 1 cut(s) | 136 |
| MnlI | CCTC | 4 cut(s) | 76, 127, 151, 167 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 162, 263 |
| NmuCI | GTSAC | 1 cut(s) | 310 |
| PceI | AGGCCT | 1 cut(s) | 161 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 241 |
| PfeI | GAWTC | 1 cut(s) | 237 |
| PspFI | CCCAGC | 1 cut(s) | 253 |
| RsaI | GTAC | 1 cut(s) | 105 |
| RsaNI | GTAC | 1 cut(s) | 104 |
| SetI | ASST | 5 cut(s) | 36, 79, 259, 268, 279 |
| SfaNI | GCATC | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 191, 322 |
| SseBI | AGGCCT | 1 cut(s) | 161 |
| StuI | AGGCCT | 1 cut(s) | 161 |
| TaaI | ACNGT | 1 cut(s) | 245 |
| TaiI | ACGT | 1 cut(s) | 79 |
| TaqI | TCGA | 2 cut(s) | 235, 247 |
| TasI | AATT | 2 cut(s) | 191, 322 |
| TfiI | GAWTC | 1 cut(s) | 237 |
| TscAI | CASTG | 1 cut(s) | 104 |
| TseFI | GTSAC | 1 cut(s) | 310 |
| Tsp45I | GTSAC | 1 cut(s) | 310 |
| TspRI | CASTG | 1 cut(s) | 104 |
| XapI | RAATTY | 1 cut(s) | 191 |