pycom08g10290

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013550
Physical Location & Seq
Reverse (-)
8655407 .. 8656406
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10290.3

Sequence Viewer

Length: 519 bp
ATGTCACAAAACAATTTAAAATTTTGTTTGCATTGGGGGAGTGGCAATCTTGTGGAAGACACGTCAGACCACACCTCTGCTATTCGGATAACGAGAAGATTAGCAGCGCGCCACTTCGCTCTCCCCTGTCTACAAAATCTCACCACCAATCCAATCCCAATGGCGGCGACGATGACGTCCTTCGCCCCCTGGAACCTCACTTCTCTACGTACTTCTCCCTCCCCTCCGCCAACGACAAGTCGTTTCTTCAAGCCCGCTAATTGCTCACCCATCATCCAACAACAGCAACAACAAGAAGAGGCTGACGTGGCAATTCTGTGCGAGGATTGCAACGGGAGAGGGTGGCTGCTCTGCGACTTTTGCAAAGGGCAGAAAACGAACGTGAAATCCGAGACCAGGCGAATCTACCGGCGATGCCCATCTTGCAGAGCTATTGGTCAGGTGTTGTGTTCAAAGTGCAAGGTTTTCAAATGTGTCACATTCCCAAATTACAATGATGGTGAGGAGGTGTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

8.9

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 175
AatII GACGTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 130
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 164, 227, 255
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 2 cut(s) 163, 396
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 250, 453, 469
AjiI CACGTC 2 cut(s) 63, 307
AjnI CCWGG 2 cut(s) 188, 395
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 1 cut(s) 431
AluI AGCT 1 cut(s) 431
Alw26I GTCTC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 104, 346
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 2 cut(s) 109, 111
AsuHPI GGTGA 3 cut(s) 133, 258, 512
BbsI GAAGAC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 116, 333
BccI CCATC 3 cut(s) 278, 427, 491
BciT130I CCWGG 2 cut(s) 190, 397
BcoDI GTCTC 1 cut(s) 386
BisI GCNGC 3 cut(s) 105, 165, 347
BlsI GCNGC 3 cut(s) 106, 166, 348
Bme1390I CCNGG 2 cut(s) 190, 397
BmgBI CACGTC 2 cut(s) 63, 307
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 190, 397
BmsI GCATC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 396
Bse118I RCCGGY 1 cut(s) 408
Bse8I GATNNNNATC 1 cut(s) 418
BseBI CCWGG 2 cut(s) 190, 397
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 1 cut(s) 273
BseJI GATNNNNATC 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 163, 396
BsePI GCGCGC 1 cut(s) 107
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 2 cut(s) 116, 333
Bsh1236I CGCG 1 cut(s) 109
BsiSI CCGG 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 163, 396
BsmAI GTCTC 1 cut(s) 386
Bso31I GGTCTC 1 cut(s) 386
BspACI CCGC 3 cut(s) 164, 227, 255
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 408
BssAI RCCGGY 1 cut(s) 408
BssECI CCNNGG 1 cut(s) 188
BssHII GCGCGC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 190, 397
Bst6I CTCTTC 1 cut(s) 291
BstACI GRCGYC 1 cut(s) 176
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 109, 255
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 2 cut(s) 109, 111
BstMAI GTCTC 1 cut(s) 386
BstMWI GCNNNNNNNGC 4 cut(s) 308, 327, 360, 423
BstNI CCWGG 2 cut(s) 190, 397
BstSCI CCNGG 2 cut(s) 188, 395
BstSNI TACGTA 1 cut(s) 209
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 2 cut(s) 116, 333
BstV2I GAAGAC 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 427
BtrI CACGTC 2 cut(s) 63, 307
BtsCI GGATG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 109, 255
CfoI GCGC 2 cut(s) 109, 111
Cfr10I RCCGGY 1 cut(s) 408
Csp6I GTAC 1 cut(s) 210
CviJI RGCY 4 cut(s) 253, 302, 346, 431
CviKI_1 RGCY 4 cut(s) 253, 302, 346, 431
CviQI GTAC 1 cut(s) 210
DraI TTTAAA 1 cut(s) 18
DrdI GACNNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 216
Eco105I TACGTA 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 188, 395
FauI CCCGC 1 cut(s) 262
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 3 cut(s) 105, 165, 347
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 105, 165, 347
GlaI GCGC 2 cut(s) 108, 110
GluI GCNGC 3 cut(s) 105, 165, 347
HapII CCGG 1 cut(s) 409
HhaI GCGC 2 cut(s) 109, 111
Hin1I GRCGYC 1 cut(s) 176
Hin6I GCGC 2 cut(s) 107, 109
HinP1I GCGC 2 cut(s) 107, 109
HinfI GANTC 1 cut(s) 402
HpaII CCGG 1 cut(s) 409
HphI GGTGA 3 cut(s) 133, 258, 512
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 67, 87, 391
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 5 cut(s) 62, 176, 208, 306, 381
HpyCH4V TGCA 5 cut(s) 31, 330, 363, 426, 459
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 327, 360, 423
HpySE526I ACGT 5 cut(s) 62, 176, 208, 306, 381
Hsp92I GRCGYC 1 cut(s) 176
HspAI GCGC 2 cut(s) 107, 109
LpnPI CCDG 7 cut(s) 139, 175, 202, 382, 409, 422, 425
Lsp1109I GCAGC 2 cut(s) 116, 333
LweI GCATC 1 cut(s) 404
MaeII ACGT 5 cut(s) 62, 176, 208, 306, 381
MaeIII GTNAC 2 cut(s) 3, 475
MboII GAAGA 4 cut(s) 68, 108, 238, 308
MluCI AATT 5 cut(s) 13, 20, 259, 312, 487
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 9 cut(s) 85, 206, 229, 234, 292, 316, 332, 496, 499
MseI TTAA 2 cut(s) 17, 517
MspI CCGG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 190, 397
MvaI CCWGG 2 cut(s) 190, 397
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 308, 327, 360, 423
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 3, 475
PauI GCGCGC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PfeI GAWTC 1 cut(s) 402
PkrI GCNGC 3 cut(s) 106, 166, 348
Ppu21I YACGTR 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 188, 395
PspGI CCWGG 2 cut(s) 188, 395
PspN4I GGNNCC 1 cut(s) 194
PteI GCGCGC 1 cut(s) 107
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 17, 517
SatI GCNGC 3 cut(s) 105, 165, 347
ScrFI CCNGG 2 cut(s) 190, 397
SfaNI GCATC 1 cut(s) 404
SnaBI TACGTA 1 cut(s) 209
Sse9I AATT 5 cut(s) 13, 20, 259, 312, 487
SsiI CCGC 3 cut(s) 164, 227, 255
StyD4I CCNGG 2 cut(s) 188, 395
TaiI ACGT 5 cut(s) 65, 179, 211, 309, 384
TasI AATT 5 cut(s) 13, 20, 259, 312, 487
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 402
Tru1I TTAA 2 cut(s) 17, 517
Tru9I TTAA 2 cut(s) 17, 517
TseFI GTSAC 2 cut(s) 3, 475
TseI GCWGC 2 cut(s) 104, 346
Tsp45I GTSAC 2 cut(s) 3, 475
XapI RAATTY 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 130
ZraI GACGTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.