RLG00000033261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013550
Physical Location & Seq
Forward (+)
25065005 .. 25065550
546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033261

Sequence Viewer

Length: 342 bp
ATGCCATTCTGGCTGTTTAAGGCCCAAATGCCGAAGAGACTTGCGACTACTCCTTCAGAGTCCAGACCAGCAAACCTATCTTCTCCGCCGCAGATCGAGACTTATTCCGATAGGCTTGCGACGAGTCGGACCTTAGAGGCTCAGATCAAGACTTGTTCTGGTAGGCTTGCGACGAGTCGGACCTCAGATCAAGACTTGTTCCACCTCAGATCGAGTCGGACTGCAGATCTAGGAGTAGACGGAGTCGGCGACTCGAGCTTATGGAGTAGGCGACGTCGGCCCAGACGGTGTGGTCTTCGTTCCCAGTCTTCGTTATGCATCCACCGCCAACGCAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

11.57

Isoelectric Point (pI)

109.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013550)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24395
fragaria_vesca FvH4_2g36440
malus_domestica MD08G1124100.v1.1 MD15G1102800.v1.1
prunus_persica Prupe.1G455800_v2.0.a1
pyrus_communis pycom08g10290
rosa_chinensis RchiOBHm_Chr6g0305461
rosa_laevigata RLG00000001888 RLG00000010890 RLG00000021566 RLG00000033261
rosa_multiflora Rmu_sc0007817.1_g000005
rosa_roxburghii Rroxscaffold_7G00162800
rosa_samantha Rh6AG452500 Rh6BG449300 Rh6CG466200 Rh6DG452900
rosa_wichuraiana Rw6G039420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AatII GACGTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 237
AciI CCGC 3 cut(s) 86, 89, 325
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 274
AluBI AGCT 1 cut(s) 258
AluI AGCT 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 31, 92
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 21, 278
AspS9I GGNCC 4 cut(s) 22, 129, 180, 279
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 2 cut(s) 129, 180
BbsI GAAGAC 2 cut(s) 287, 300
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BcoDI GTCTC 2 cut(s) 31, 92
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 226
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 2 cut(s) 129, 180
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 4 cut(s) 22, 129, 180, 279
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 2 cut(s) 287, 300
BsaHI GRCGYC 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 155, 198, 220
BseNI ACTGG 1 cut(s) 304
BshFI GGCC 2 cut(s) 23, 280
BsiHKCI CYCGRG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 31, 92
BsnI GGCC 2 cut(s) 23, 280
BsoBI CYCGRG 1 cut(s) 253
Bsp143I GATC 5 cut(s) 93, 144, 187, 209, 226
BspACI CCGC 3 cut(s) 86, 89, 325
BspANI GGCC 2 cut(s) 23, 280
BspCNI CTCAG 3 cut(s) 154, 197, 219
BspMAI CTGCAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 304
BssMI GATC 5 cut(s) 93, 144, 187, 209, 226
BssNI GRCGYC 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 117, 168
BstDEI CTNAG 4 cut(s) 133, 141, 184, 206
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 5 cut(s) 96, 147, 190, 212, 229
BstMAI GTCTC 2 cut(s) 31, 92
BstMBI GATC 5 cut(s) 93, 144, 187, 209, 226
BstMWI GCNNNNNNNGC 4 cut(s) 10, 255, 277, 324
BstSFI CTRYAG 1 cut(s) 222
BstV2I GAAGAC 2 cut(s) 287, 300
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 2 cut(s) 23, 280
BtsCI GGATG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 117, 168
Cfr13I GGNCC 4 cut(s) 22, 129, 180, 279
CviJI RGCY 7 cut(s) 13, 23, 115, 140, 166, 258, 280
CviKI_1 RGCY 7 cut(s) 13, 23, 115, 140, 166, 258, 280
DdeI CTNAG 4 cut(s) 133, 141, 184, 206
DpnI GATC 5 cut(s) 95, 146, 189, 211, 228
DpnII GATC 5 cut(s) 93, 144, 187, 209, 226
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 129, 180
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 253
EcoT22I ATGCAT 1 cut(s) 320
FaiI YATR 2 cut(s) 262, 316
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 23, 280
Hin1I GRCGYC 1 cut(s) 274
HinfI GANTC 6 cut(s) 59, 124, 175, 214, 243, 251
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 8 cut(s) 58, 109, 129, 144, 180, 187, 209, 219
Hpy188III TCNNGA 4 cut(s) 63, 97, 148, 191
Hpy8I GTNNAC 1 cut(s) 238
Hpy99I CGWCG 4 cut(s) 124, 175, 276, 279
HpyAV CCTTC 2 cut(s) 63, 330
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 224, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 255, 277, 324
HpyF3I CTNAG 4 cut(s) 133, 141, 184, 206
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 274
Kzo9I GATC 5 cut(s) 93, 144, 187, 209, 226
LpnPI CCDG 5 cut(s) 76, 81, 144, 295, 317
LweI GCATC 1 cut(s) 327
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 274
MalI GATC 5 cut(s) 95, 146, 189, 211, 228
MboI GATC 5 cut(s) 93, 144, 187, 209, 226
MboII GAAGA 4 cut(s) 46, 72, 287, 300
MflI RGATCY 1 cut(s) 226
MlyI GAGTC 6 cut(s) 68, 133, 184, 223, 245, 252
MmeI TCCRAC 3 cut(s) 107, 158, 197
MnlI CCTC 3 cut(s) 130, 193, 215
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 10, 255, 277, 324
NdeII GATC 5 cut(s) 93, 144, 187, 209, 226
NsiI ATGCAT 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 6 cut(s) 67, 132, 183, 222, 245, 251
PpsI GAGTC 6 cut(s) 67, 132, 183, 222, 245, 251
PspPI GGNCC 4 cut(s) 22, 129, 180, 279
PspXI VCTCGAGB 1 cut(s) 253
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 226
PsyI GACNNNGTC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 5 cut(s) 93, 144, 187, 209, 226
Sau96I GGNCC 4 cut(s) 22, 129, 180, 279
SchI GAGTC 6 cut(s) 68, 133, 184, 223, 245, 252
SetI ASST 7 cut(s) 78, 134, 185, 207, 260, 277, 341
SfaNI GCATC 1 cut(s) 327
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 253
SinI GGWCC 2 cut(s) 129, 180
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SsiI CCGC 3 cut(s) 86, 89, 325
SspMI CTAG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 96, 212, 254
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 129, 180
XhoI CTCGAG 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.