AT2G24800

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012955
Physical Location & Seq
Reverse (-)
10571054 .. 10572636
1583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24800.2

Sequence Viewer

Length: 990 bp
ATGGCGTTGCAGTTTTTTTCATGCAAACCAAAATATACATTCCTCTCCTCTCTTCTTCTACTTTTGCTTCTTTCTTCTTCAGTAGCTGAGCTCTCTTTCAACTTCTACGCCGGTTCTTGTCCTGGAGCTGAGTTAATCGTCAGAAACACCGTTAGATCTGCTTCTTCCTCTGATCCATCAGTCCTTGGGAAGCTCCTACGTCTCATCTTCCATGACTGCTTCGTCCAGGGTTGTGATGGCTCAGTGTTGATTCGAGGAAACGGTACAGAGCGAAGCGACCCTGGGAATGCGTCTCTAGGAGGATTCGCTGTGATAGAAAGCGTCAAAAATATCCTCGAAATCTTTTGTCCCGGCACAGTCTCTTGTGCTGATATACTTGTTCTTGCCGCAAGAGATGCAGTAGAAGCTCTCGGAGGACCGGTAGTTCCGATACCGACAGGGAGGAGAGACGGGAGAGTCTCAATGGCAGCAAATGTCAGACCAAACATCATAGATACCGATTTCACAGTTGATAAGATGATCAATATCTTTTCCTCTAAAGGCTTATCTGTTCATGATCTAGTTGTCCTCTCAGGAGCGCACACTATTGGAGCTGCGCATTGTAACACGTTCAACAGCAGGTTTAAGCTTGATCCAAAAGGCAACTTAGAACTAATAGACGCGTCTCTCGATAACTCCTATGCGCAAACACTTGTAAACAAGTGTTCATCGTCACTAGATCCAACGACCACGGTGGTTGATAACGATCCAGAGACATCGTCGACGTTCGATAATCAGTACTACAAGAATCTGTTGGCTCACAAGGGTTTGTTTCAAACGGATTCAGCTCTCATGGAAGATGATCGGACGAGGAAGATTGTTGAGATTCTTGCGAATGATCAGGAGAGTTTTTTCGATAGATGGACTGAGTCTTTTTTGAAGATGAGTTTGATGGGAGTGAGAGTTGGTGAAGAAGGTGAGATTAGACGTTCTTGTTCTGCTGTTAATTAA

Protein Analysis

329

Amino Acids

35.64

Weight (kDa)

5.21

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 195 4.4e-51 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24800 AT2G24800 AT4G31760
fragaria_vesca FvH4_2g41361
malus_domestica MD08G1051200.v1.1
prunus_persica Prupe.1G397400_v2.0.a1
pyrus_communis pycom15g04080
rosa_chinensis RchiOBHm_Chr6g0299121
rosa_multiflora Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa Rorug06G0285500
rosa_samantha Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana Rw6G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 221, 455
Acc16I TGCGCA 2 cut(s) 597, 684
Acc36I ACCTGC 1 cut(s) 609
AccI GTMKAC 1 cut(s) 761
AccII CGCG 1 cut(s) 662
AciI CCGC 1 cut(s) 387
AclWI GGATC 4 cut(s) 167, 626, 713, 740
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 265, 779
AflIII ACRYGT 2 cut(s) 606, 660
AgeI ACCGGT 1 cut(s) 418
AgsI TTSAA 4 cut(s) 100, 613, 815, 919
AjnI CCWGG 3 cut(s) 121, 225, 280
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 8 cut(s) 86, 91, 128, 193, 407, 593, 628, 827
AluI AGCT 8 cut(s) 86, 91, 128, 193, 407, 593, 628, 827
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 7 cut(s) 206, 297, 364, 441, 463, 669, 746
AlwI GGATC 4 cut(s) 167, 626, 713, 740
AlwNI CAGNNNCTG 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 467, 593
AsiGI ACCGGT 1 cut(s) 418
AspLEI GCGC 3 cut(s) 580, 598, 685
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 959, 968
AvaII GGWCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 479, 580
BccI CCATC 4 cut(s) 184, 230, 894, 925
BciT130I CCWGG 3 cut(s) 123, 227, 282
BclI TGATCA 2 cut(s) 519, 877
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 7 cut(s) 206, 297, 364, 441, 463, 669, 746
BfaI CTAG 3 cut(s) 296, 560, 716
BfuAI ACCTGC 1 cut(s) 609
BglII AGATCT 1 cut(s) 155
BisI GCNGC 3 cut(s) 387, 468, 594
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 3 cut(s) 388, 469, 595
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 4 cut(s) 123, 227, 282, 351
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmrFI CCNGG 4 cut(s) 123, 227, 282, 351
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 351
BsaBI GATNNNNATC 2 cut(s) 524, 744
BsaJI CCNNGG 5 cut(s) 184, 226, 280, 281, 729
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 927, 957
Bse118I RCCGGY 2 cut(s) 110, 418
Bse8I GATNNNNATC 2 cut(s) 524, 744
BseBI CCWGG 3 cut(s) 123, 227, 282
BseDI CCNNGG 5 cut(s) 184, 226, 280, 281, 729
BseJI GATNNNNATC 2 cut(s) 524, 744
BseMII CTCAG 5 cut(s) 78, 120, 255, 585, 897
BseRI GAGGAG 2 cut(s) 37, 457
BseXI GCAGC 2 cut(s) 479, 580
Bsh1236I CGCG 1 cut(s) 662
BshTI ACCGGT 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 3 cut(s) 111, 351, 419
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 7 cut(s) 206, 297, 364, 441, 463, 669, 746
BsmBI CGTCTC 4 cut(s) 206, 297, 441, 669
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 1 cut(s) 387
BspCNI CTCAG 5 cut(s) 79, 121, 254, 584, 898
BspFNI CGCG 1 cut(s) 662
BspHI TCATGA 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 609
BspPI GGATC 4 cut(s) 167, 626, 713, 740
BsrFI RCCGGY 2 cut(s) 110, 418
BssAI RCCGGY 2 cut(s) 110, 418
BssECI CCNNGG 5 cut(s) 184, 226, 280, 281, 729
BssMI GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 3 cut(s) 123, 227, 282
Bst4CI ACNGT 5 cut(s) 151, 263, 358, 508, 733
Bst6I CTCTTC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 395
BstDEI CTNAG 6 cut(s) 87, 129, 241, 571, 646, 906
BstDSI CCRYGG 1 cut(s) 729
BstFNI CGCG 1 cut(s) 662
BstHHI GCGC 3 cut(s) 580, 598, 685
BstKTI GATC 9 cut(s) 158, 175, 522, 559, 634, 721, 748, 844, 880
BstMAI GTCTC 7 cut(s) 206, 297, 364, 441, 463, 669, 746
BstMBI GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
BstMWI GCNNNNNNNGC 2 cut(s) 395, 404
BstNI CCWGG 3 cut(s) 123, 227, 282
BstSCI CCNGG 4 cut(s) 121, 225, 280, 349
BstUI CGCG 1 cut(s) 662
BstV1I GCAGC 2 cut(s) 479, 580
BstX2I RGATCY 2 cut(s) 155, 718
BstYI RGATCY 2 cut(s) 155, 718
BtgI CCRYGG 1 cut(s) 729
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 553
CfoI GCGC 3 cut(s) 580, 598, 685
Cfr10I RCCGGY 2 cut(s) 110, 418
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 4 cut(s) 279, 310, 651, 668
Csp6I GTAC 2 cut(s) 264, 778
CspAI ACCGGT 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 4 cut(s) 21, 212, 554, 832
CviQI GTAC 2 cut(s) 264, 778
DdeI CTNAG 6 cut(s) 87, 129, 241, 571, 646, 906
DpnI GATC 9 cut(s) 157, 174, 521, 558, 633, 720, 747, 843, 879
DpnII GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
DrdI GACNNNNNNGTC 2 cut(s) 221, 455
DseDI GACNNNNNNGTC 2 cut(s) 221, 455
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 121, 225, 280
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 184
Esp3I CGTCTC 4 cut(s) 206, 297, 441, 669
FaeI CATG 4 cut(s) 24, 215, 557, 835
FaiI YATR 8 cut(s) 22, 36, 213, 374, 491, 555, 681, 833
FaqI GGGAC 1 cut(s) 333
FatI CATG 4 cut(s) 20, 211, 553, 831
FbaI TGATCA 2 cut(s) 519, 877
FblI GTMKAC 1 cut(s) 761
Fnu4HI GCNGC 3 cut(s) 387, 468, 594
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 387, 468, 594
FspBI CTAG 3 cut(s) 296, 560, 716
FspI TGCGCA 2 cut(s) 597, 684
GlaI GCGC 3 cut(s) 579, 597, 684
GluI GCNGC 3 cut(s) 387, 468, 594
GsuI CTGGAG 1 cut(s) 144
HapII CCGG 3 cut(s) 111, 351, 419
HgaI GACGC 4 cut(s) 279, 310, 651, 668
HhaI GCGC 3 cut(s) 580, 598, 685
Hin1II CATG 4 cut(s) 24, 215, 557, 835
Hin6I GCGC 3 cut(s) 578, 596, 683
HinP1I GCGC 3 cut(s) 578, 596, 683
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 626
HinfI GANTC 7 cut(s) 250, 303, 456, 787, 821, 865, 908
HpaII CCGG 3 cut(s) 111, 351, 419
HphI GGTGA 2 cut(s) 959, 968
Hpy166II GTNNAC 2 cut(s) 697, 762
Hpy188I TCNGA 6 cut(s) 143, 172, 413, 429, 479, 846
Hpy188III TCNNGA 5 cut(s) 554, 573, 668, 749, 881
Hpy8I GTNNAC 2 cut(s) 697, 762
Hpy99I CGWCG 2 cut(s) 763, 766
HpyAV CCTTC 1 cut(s) 947
HpyCH4III ACNGT 5 cut(s) 151, 263, 358, 508, 733
HpyCH4IV ACGT 4 cut(s) 199, 608, 764, 967
HpyCH4V TGCA 3 cut(s) 10, 24, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 404
HpyF3I CTNAG 6 cut(s) 87, 129, 241, 571, 646, 906
HpySE526I ACGT 4 cut(s) 199, 608, 764, 967
Hsp92II CATG 4 cut(s) 24, 215, 557, 835
HspAI GCGC 3 cut(s) 578, 596, 683
Ksp22I TGATCA 2 cut(s) 519, 877
Kzo9I GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
LmnI GCTCC 4 cut(s) 125, 198, 575, 590
Lsp1109I GCAGC 2 cut(s) 479, 580
LweI GCATC 1 cut(s) 385
MaeI CTAG 3 cut(s) 296, 560, 716
MaeII ACGT 4 cut(s) 199, 608, 764, 967
MaeIII GTNAC 2 cut(s) 602, 711
MalI GATC 9 cut(s) 157, 174, 521, 558, 633, 720, 747, 843, 879
MboI GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
MflI RGATCY 2 cut(s) 155, 718
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 985
MluI ACGCGT 1 cut(s) 660
MlyI GAGTC 2 cut(s) 465, 917
MmeI TCCRAC 1 cut(s) 746
MseI TTAA 4 cut(s) 134, 624, 984, 988
MspI CCGG 3 cut(s) 111, 351, 419
MspR9I CCNGG 4 cut(s) 123, 227, 282, 351
Mva1269I GAATGC 1 cut(s) 292
MvaI CCWGG 3 cut(s) 123, 227, 282
MvnI CGCG 1 cut(s) 662
MwoI GCNNNNNNNGC 2 cut(s) 395, 404
NciI CCSGG 1 cut(s) 351
NdeII GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
NlaIII CATG 4 cut(s) 24, 215, 557, 835
NmuCI GTSAC 1 cut(s) 711
NsbI TGCGCA 2 cut(s) 597, 684
PacI TTAATTAA 1 cut(s) 988
PagI TCATGA 1 cut(s) 553
PasI CCCWGGG 1 cut(s) 281
PcsI WCGNNNNNNNCGW 1 cut(s) 666
PctI GAATGC 1 cut(s) 292
PfeI GAWTC 5 cut(s) 250, 303, 787, 821, 865
PflFI GACNNNGTC 2 cut(s) 757, 907
PfoI TCCNGGA 1 cut(s) 121
PinAI ACCGGT 1 cut(s) 418
PkrI GCNGC 3 cut(s) 388, 469, 595
PleI GAGTC 2 cut(s) 464, 916
PpsI GAGTC 2 cut(s) 464, 916
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 121, 225, 280
PspGI CCWGG 3 cut(s) 121, 225, 280
PspPI GGNCC 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 2 cut(s) 155, 718
PsyI GACNNNGTC 2 cut(s) 757, 907
RsaI GTAC 2 cut(s) 265, 779
RsaNI GTAC 2 cut(s) 264, 778
SacI GAGCTC 1 cut(s) 93
SalI GTCGAC 1 cut(s) 760
SaqAI TTAA 4 cut(s) 134, 624, 984, 988
SatI GCNGC 3 cut(s) 387, 468, 594
Sau3AI GATC 9 cut(s) 155, 172, 519, 556, 631, 718, 745, 841, 877
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 779
SchI GAGTC 2 cut(s) 465, 917
ScrFI CCNGG 4 cut(s) 123, 227, 282, 351
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 1 cut(s) 385
SgrDI CGTCGACG 1 cut(s) 760
SinI GGWCC 1 cut(s) 416
Sse9I AATT 1 cut(s) 985
SsiI CCGC 1 cut(s) 387
SspMI CTAG 3 cut(s) 296, 560, 716
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 121, 225, 280, 349
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 5 cut(s) 151, 263, 358, 508, 733
TaiI ACGT 4 cut(s) 202, 611, 767, 970
TaqI TCGA 6 cut(s) 253, 336, 669, 761, 768, 894
TasI AATT 1 cut(s) 985
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 5 cut(s) 250, 303, 787, 821, 865
Tru1I TTAA 4 cut(s) 134, 624, 984, 988
Tru9I TTAA 4 cut(s) 134, 624, 984, 988
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 711
TseI GCWGC 2 cut(s) 467, 593
Tsp45I GTSAC 1 cut(s) 711
TspDTI ATGAA 3 cut(s) 9, 542, 696
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 1 cut(s) 249
Tth111I GACNNNGTC 2 cut(s) 757, 907
VpaK11BI GGWCC 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 761
XspI CTAG 3 cut(s) 296, 560, 716
ZrmI AGTACT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.