Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8172104.1

Orthogroup ID

OG0012955

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 397

Gene Structure 397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8172104.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

agctcattgcagtgcattcagtgaccggttccaagaagactcgaaaggaaaattcacactcattgacacatctttagacaacggctatgcagagaagctcatgaaacagtgccctccaggcgcaaatccatctataacagtccaaaatgatcctgaaacttcctttgtgtttgataatcattactacggcaatctcttggcccacagagggctgtttcaatcagattctgtcctgttcactgacagtagatcaagcaaacaagtgaagaattttgcagaagaccaagttggattttttgagagttgggttcagtcattcttgaagcttactagcattcatgttaagacaggtgataaaggggaaattcgagcattttgtcctacagctaatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

131

Amino Acids

14.62

Weight (kDa)

5.75

Isoelectric Point (pI)

35.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24800 AT2G24800 AT4G31760
fragaria_vesca	FvH4_2g41361
malus_domestica	MD08G1051200.v1.1
prunus_persica	Prupe.1G397400_v2.0.a1
pyrus_communis	pycom15g04080
rosa_chinensis	RchiOBHm_Chr6g0299121
rosa_multiflora	Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa	Rorug06G0285500
rosa_samantha	Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana	Rw6G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	3 cut(s)	51, 269, 364
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgeI	ACCGGT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	219, 323
AjnI	CCWGG	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	271, 303
AluBI	AGCT	4 cut(s)	3, 98, 326, 387
AluI	AGCT	4 cut(s)	3, 98, 326, 387
AlwI	GGATC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	228
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	3 cut(s)	51, 269, 364
AsiGI	ACCGGT	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	43, 286
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	2 cut(s)	98, 203
BciT130I	CCWGG	1 cut(s)	118
BfaI	CTAG	1 cut(s)	331
BfmI	CTRYAG	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	43, 286
BpmI	CTGGAG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	114
BshFI	GGCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmI	GAATGC	2 cut(s)	15, 334
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	149, 249
BspANI	GGCC	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	2 cut(s)	149, 249
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	3 cut(s)	109, 140, 246
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	2 cut(s)	152, 252
BstMBI	GATC	2 cut(s)	149, 249
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	114
BstV2I	GAAGAC	2 cut(s)	43, 286
BsuRI	GGCC	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	4 cut(s)	17, 26, 114, 238
CaiI	CAGNNNCTG	1 cut(s)	228
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	200
CspAI	ACCGGT	1 cut(s)	25
CviAII	CATG	3 cut(s)	101, 339, 394
CviJI	RGCY	7 cut(s)	3, 85, 98, 201, 212, 326, 387
CviKI_1	RGCY	7 cut(s)	3, 85, 98, 201, 212, 326, 387
DpnI	GATC	2 cut(s)	151, 251
DpnII	GATC	2 cut(s)	149, 249
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	395
FaeI	CATG	3 cut(s)	104, 342, 397
FaiI	YATR	5 cut(s)	88, 102, 135, 340, 395
FatI	CATG	3 cut(s)	100, 338, 393
FspBI	CTAG	1 cut(s)	331
GlaI	GCGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	104, 342, 397
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	2 cut(s)	39, 225
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	3 cut(s)	101, 153, 320
Hpy8I	GTNNAC	1 cut(s)	238
HpyCH4III	ACNGT	3 cut(s)	109, 140, 246
HpyCH4V	TGCA	5 cut(s)	10, 15, 90, 276, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
Hsp92II	CATG	3 cut(s)	104, 342, 397
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	149, 249
LpnPI	CCDG	6 cut(s)	39, 103, 130, 166, 246, 334
MaeI	CTAG	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	151, 251
MboI	GATC	2 cut(s)	149, 249
MboII	GAAGA	3 cut(s)	48, 278, 291
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	3 cut(s)	51, 269, 364
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	124, 201
Mph1103I	ATGCAT	1 cut(s)	395
MseI	TTAA	1 cut(s)	343
MslI	CAYNNNNRTG	1 cut(s)	10
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	2 cut(s)	15, 334
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	149, 249
NlaIII	CATG	3 cut(s)	104, 342, 397
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	21
NsiI	ATGCAT	1 cut(s)	395
PagI	TCATGA	1 cut(s)	100
PctI	GAATGC	2 cut(s)	15, 334
PfeI	GAWTC	1 cut(s)	225
PinAI	ACCGGT	1 cut(s)	25
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	343
Sau3AI	GATC	2 cut(s)	149, 249
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	100, 328, 353, 389
SfcI	CTRYAG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	51, 269, 364
SspMI	CTAG	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	3 cut(s)	109, 140, 246
TaqI	TCGA	2 cut(s)	42, 368
TasI	AATT	3 cut(s)	51, 269, 364
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	343
Tru9I	TTAA	1 cut(s)	343
TscAI	CASTG	4 cut(s)	17, 26, 114, 245
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
TspDTI	ATGAA	2 cut(s)	117, 327
TspRI	CASTG	4 cut(s)	17, 26, 114, 245
XapI	RAATTY	3 cut(s)	51, 269, 364
XspI	CTAG	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.