AT4G31760

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012955
Physical Location & Seq
Reverse (-)
15368260 .. 15369724
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31760.1

Sequence Viewer

Length: 981 bp
ATGGCGTCCTCTTACAGAATAAACTGTTCCACTCTTCTTCATCTCCTTATGTTTCTGTCTAGTCTTCTCACTTCCTCCGCCAACCTCTCCTTTAATTTCTATGCTAGTTCTTGTTCTGTAGCCGAGTTTCTAGTCAGAAACACCGTTAGATCAGCTACCTCCTCCGATCCAACGATCCCCGGGAAACTCCTTCGTCTTTTCTTCCACGACTGTTTCGTCCAGGGTTGTGATGCATCAGTGTTGATACAAGGGAATAGCACAGAGAAAAGCGATCCCGGAAACGCATCTCTTGGAGGATTCTCAGTCATAGACACAGCCAAGAATGCCATCGAGAATTTATGTCCGGCCACTGTTTCTTGCGCTGACATAGTTGCACTTGCTGCTAGAGACGCCGTCGAAGCTGCAGGAGGACCGGTGGTTGAGATTCCGACAGGGAGGAGAGACGGGAAAGAATCGATGGCTGCAAACGTGAGACCGAACATCATCGACACAGATTTTACTCTCGATCAAATGATCGATGCCTTCTCTTCCAAAGGCTTGTCCATTCAAGATCTCGTCGTCCTCTCAGGAGCACACACAATTGGAGCATCACACTGTAACGCATTCAATGGAAGGTTTCAACGAGACTCGAAAGGAAACTTCGAGGTAATTGATGCGTCTCTCGACAACTCCTACGCAGAGACACTAATGAACAAGTGTTCGTCCTCGGAATCCTCATCATTGACTGTGAGCAACGATCCAGAGACATCTGCCGTATTCGATAATCAGTACTATAGGAATCTTGAGACGCACAAGGGTTTGTTTCAGACGGATTCTGCTTTGATGGAGGATAATCGGACGAGGACAATGGTGGAGGAATTAGCGAGTGATGAGGAAAGCTTTTTTCAAAGATGGAGTGAGTCGTTTGTGAAACTGAGTATGGTTGGTGTGAGAGTTGGTGAAGATGGTGAGATAAGACGTTCTTGTTCTTCCGTCAATTAA

Protein Analysis

326

Amino Acids

35.24

Weight (kDa)

4.74

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 290 6.7e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24800 AT2G24800 AT4G31760
fragaria_vesca FvH4_2g41361
malus_domestica MD08G1051200.v1.1
prunus_persica Prupe.1G397400_v2.0.a1
pyrus_communis pycom15g04080
rosa_chinensis RchiOBHm_Chr6g0299121
rosa_multiflora Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa Rorug06G0285500
rosa_samantha Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana Rw6G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AciI CCGC 1 cut(s) 78
AclWI GGATC 4 cut(s) 161, 169, 266, 731
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 5, 390
AfaI GTAC 1 cut(s) 770
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 4 cut(s) 548, 607, 620, 887
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 3 cut(s) 155, 401, 879
AluI AGCT 3 cut(s) 155, 401, 879
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 8 cut(s) 381, 435, 466, 618, 663, 674, 737, 779
AlwI GGATC 4 cut(s) 161, 169, 266, 731
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 380, 401, 461
ApoI RAATTY 1 cut(s) 334
AsiGI ACCGGT 1 cut(s) 412
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 3 cut(s) 180, 181, 276
AsuHPI GGTGA 2 cut(s) 950, 959
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 3 cut(s) 367, 388, 448
BccI CCATC 5 cut(s) 335, 451, 817, 885, 938
BceAI ACGGC 2 cut(s) 377, 737
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 3 cut(s) 180, 181, 276
BcoDI GTCTC 8 cut(s) 381, 435, 466, 618, 663, 674, 737, 779
BfaI CTAG 4 cut(s) 60, 105, 131, 384
BfmI CTRYAG 3 cut(s) 117, 402, 772
BglII AGATCT 1 cut(s) 550
BisI GCNGC 3 cut(s) 381, 402, 462
BlsI GCNGC 3 cut(s) 382, 403, 463
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 4 cut(s) 180, 181, 221, 276
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 4 cut(s) 180, 181, 221, 276
BmsI GCATC 6 cut(s) 220, 242, 293, 508, 596, 643
BpiI GAAGAC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 3 cut(s) 180, 181, 276
Bsa29I ATCGAT 2 cut(s) 455, 516
BsaHI GRCGYC 2 cut(s) 5, 390
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 4 cut(s) 178, 179, 220, 705
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bse118I RCCGGY 1 cut(s) 412
BseBI CCWGG 1 cut(s) 221
BseCI ATCGAT 2 cut(s) 455, 516
BseDI CCNNGG 4 cut(s) 178, 179, 220, 705
BseMII CTCAG 3 cut(s) 315, 579, 905
BseRI GAGGAG 2 cut(s) 151, 451
BseXI GCAGC 3 cut(s) 367, 388, 448
BshFI GGCC 1 cut(s) 347
BshTI ACCGGT 1 cut(s) 412
BshVI ATCGAT 2 cut(s) 455, 516
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 4 cut(s) 180, 276, 344, 413
BsmAI GTCTC 8 cut(s) 381, 435, 466, 618, 663, 674, 737, 779
BsmBI CGTCTC 4 cut(s) 381, 435, 663, 779
BsmI GAATGC 2 cut(s) 328, 602
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 3 cut(s) 314, 578, 906
BspDI ATCGAT 2 cut(s) 455, 516
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 4 cut(s) 161, 169, 266, 731
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 412
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 4 cut(s) 178, 179, 220, 705
BssMI GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
BssNI GRCGYC 2 cut(s) 5, 390
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 6 cut(s) 26, 145, 212, 352, 596, 727
Bst6I CTCTTC 2 cut(s) 39, 532
BstACI GRCGYC 2 cut(s) 5, 390
BstAPI GCANNNNNTGC 1 cut(s) 380
BstDEI CTNAG 3 cut(s) 301, 565, 914
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 8 cut(s) 152, 169, 177, 274, 508, 516, 553, 739
BstMAI GTCTC 8 cut(s) 381, 435, 466, 618, 663, 674, 737, 779
BstMBI GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
BstMWI GCNNNNNNNGC 4 cut(s) 323, 380, 389, 398
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 4 cut(s) 178, 179, 219, 274
BstSFI CTRYAG 3 cut(s) 117, 402, 772
BstV1I GCAGC 3 cut(s) 367, 388, 448
BstV2I GAAGAC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu15I ATCGAT 2 cut(s) 455, 516
BsuRI GGCC 1 cut(s) 347
BsuTUI ATCGAT 2 cut(s) 455, 516
BtsIMutI CAGTG 3 cut(s) 243, 348, 592
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 410
Cfr9I CCCGGG 1 cut(s) 179
ClaI ATCGAT 2 cut(s) 455, 516
CseI GACGC 3 cut(s) 398, 645, 796
Csp6I GTAC 1 cut(s) 769
CspAI ACCGGT 1 cut(s) 412
CviJI RGCY 8 cut(s) 122, 155, 317, 347, 401, 461, 537, 879
CviKI_1 RGCY 8 cut(s) 122, 155, 317, 347, 401, 461, 537, 879
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 3 cut(s) 301, 565, 914
DpnI GATC 8 cut(s) 151, 168, 176, 273, 507, 515, 552, 738
DpnII GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 39, 532
EarI CTCTTC 2 cut(s) 39, 532
EciI GGCGGA 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 235
Esp3I CGTCTC 4 cut(s) 381, 435, 663, 779
FaiI YATR 7 cut(s) 50, 102, 308, 340, 368, 774, 920
FalI AAGNNNNNCTT 2 cut(s) 946, 978
Fnu4HI GCNGC 3 cut(s) 381, 402, 462
Fsp4HI GCNGC 3 cut(s) 381, 402, 462
FspBI CTAG 4 cut(s) 60, 105, 131, 384
GlaI GCGC 1 cut(s) 361
GluI GCNGC 3 cut(s) 381, 402, 462
HaeIII GGCC 1 cut(s) 347
HapII CCGG 4 cut(s) 180, 276, 344, 413
HgaI GACGC 3 cut(s) 398, 645, 796
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 2 cut(s) 5, 390
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 8 cut(s) 297, 424, 452, 626, 710, 778, 812, 899
HpaII CCGG 4 cut(s) 180, 276, 344, 413
HphI GGTGA 2 cut(s) 950, 959
Hpy188I TCNGA 6 cut(s) 137, 166, 429, 709, 807, 837
Hpy188III TCNNGA 7 cut(s) 331, 503, 548, 567, 662, 740, 782
Hpy99I CGWCG 2 cut(s) 398, 560
HpyAV CCTTC 3 cut(s) 200, 532, 606
HpyCH4III ACNGT 6 cut(s) 26, 145, 212, 352, 596, 727
HpyCH4IV ACGT 2 cut(s) 468, 958
HpyCH4V TGCA 4 cut(s) 233, 374, 404, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 380, 389, 398
HpyF3I CTNAG 3 cut(s) 301, 565, 914
HpySE526I ACGT 2 cut(s) 468, 958
Hsp92I GRCGYC 2 cut(s) 5, 390
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
LmnI GCTCC 2 cut(s) 569, 584
Lsp1109I GCAGC 3 cut(s) 367, 388, 448
LweI GCATC 6 cut(s) 220, 242, 293, 508, 596, 643
MaeI CTAG 4 cut(s) 60, 105, 131, 384
MaeII ACGT 2 cut(s) 468, 958
MaeIII GTNAC 1 cut(s) 596
MalI GATC 8 cut(s) 151, 168, 176, 273, 507, 515, 552, 738
MboI GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
MboII GAAGA 7 cut(s) 26, 29, 56, 193, 519, 953, 960
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 6 cut(s) 94, 334, 579, 648, 857, 976
MlyI GAGTC 2 cut(s) 620, 908
MmeI TCCRAC 2 cut(s) 194, 452
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 2 cut(s) 93, 979
MspI CCGG 4 cut(s) 180, 276, 344, 413
MspR9I CCNGG 4 cut(s) 180, 181, 221, 276
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 2 cut(s) 328, 602
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 323, 380, 389, 398
NciI CCSGG 3 cut(s) 180, 181, 276
NdeII GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
NmeAIII GCCGAG 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 2 cut(s) 328, 602
PfeI GAWTC 6 cut(s) 297, 424, 452, 710, 778, 812
PflFI GACNNNGTC 1 cut(s) 392
PfoI TCCNGGA 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 3 cut(s) 382, 403, 463
PleI GAGTC 2 cut(s) 620, 907
PpsI GAGTC 2 cut(s) 620, 907
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 1 cut(s) 410
PstI CTGCAG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
SaqAI TTAA 2 cut(s) 93, 979
SatI GCNGC 3 cut(s) 381, 402, 462
Sau3AI GATC 8 cut(s) 149, 166, 174, 271, 505, 513, 550, 736
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 770
SchI GAGTC 2 cut(s) 620, 908
ScrFI CCNGG 4 cut(s) 180, 181, 221, 276
SduI GDGCHC 1 cut(s) 574
SetI ASST 9 cut(s) 87, 157, 161, 403, 471, 617, 648, 881, 961
SfaNI GCATC 6 cut(s) 220, 242, 293, 508, 596, 643
SfcI CTRYAG 3 cut(s) 117, 402, 772
SinI GGWCC 1 cut(s) 410
SmaI CCCGGG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 782
SmoI CTYRAG 1 cut(s) 782
Sse9I AATT 6 cut(s) 94, 334, 579, 648, 857, 976
SsiI CCGC 1 cut(s) 78
SspMI CTAG 4 cut(s) 60, 105, 131, 384
StyD4I CCNGG 4 cut(s) 178, 179, 219, 274
TaaI ACNGT 6 cut(s) 26, 145, 212, 352, 596, 727
TaiI ACGT 2 cut(s) 471, 961
TaqII GACCGA 1 cut(s) 490
TasI AATT 6 cut(s) 94, 334, 579, 648, 857, 976
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 6 cut(s) 297, 424, 452, 710, 778, 812
Tru1I TTAA 2 cut(s) 93, 979
Tru9I TTAA 2 cut(s) 93, 979
TscAI CASTG 3 cut(s) 243, 355, 599
TseI GCWGC 3 cut(s) 380, 401, 461
TspDTI ATGAA 2 cut(s) 29, 704
TspGWI ACGGA 2 cut(s) 824, 961
TspMI CCCGGG 1 cut(s) 179
TspRI CASTG 3 cut(s) 243, 355, 599
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 334
XmaI CCCGGG 1 cut(s) 179
XspI CTAG 4 cut(s) 60, 105, 131, 384
ZrmI AGTACT 1 cut(s) 770
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.