Prupe.1G397400_v2.0.a1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012955
Physical Location & Seq
Forward (+)
35195006 .. 35196774
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G397400.1

Sequence Viewer

Length: 987 bp
ATGGAGAAAAGACCAACAGCCTTCTTTTACACACATGGTGTCTTCTTTGTGTGGTTATGTTTAGCTGCTTCTGCTTCTTGTGATGAGCTCACATTGAGTTTCTACTCAGCTTCATGCCCTTCTGCTGAGCTCATGGTCAGAAACACAGTCAGATCAGCTTCTGACATAGACCCTACCATCCCTGGGAAGCTTCTTCGCTTGCTCTTCCATGATTGCTTTGTGGAGGGTTGTGATGCATCTGTGCTTCTACAAGGAACTGGGACTGAGAGAAGTGATCCAGCAAACACATCTCTGGGAGGCTTTTCAGTGATTGATTCAGCAAAAAGACTGCTTGAAATTTTCTGTCCAGGAACTGTTTCTTGTGCTGACATTGTTGCTTTGGCTGCTAGAGATGCTGTTGAAATTTCTGGGGGACCTGTAGTTCAGATTCCAACTGGTAGGAGAGATGGAAAGGTTTCTGCAGCTTCAAATGTCAGGCCTAATATTGTAGACACAAGTTTTACAATGGATGAGATGATTAAGCTCTTCTCATCTAAAGGGTTGTCTTTGGATGACCTTGTCACCCTATCAGGAGCTCACACTATTGGATCAGCTCATTGTGGCGCATTCAGTGACAGGTTCCAACAAGACTCCAAGGGGAAACTCAAACTCATTGACACATCCTTAGACAACGCTTATGCAGAGGAGCTCATGAGACAGTGCCCTGCGGGCGCAAATCCATCTACAACAGTCAAAATTGATCCTAACACTTCGTTTGCGTTCGATAATCATTACTACCAAAATCTCTTAGCCCACAGAGGGCTATTTCAATCGGATTCCGTCCTGTTAAGTGATGACAGAACAAGGAAGCTAGTGGAGAGTTTTGCACAGGACCAAGTTATTTTCTTGGAGAGTTGGGCTCAGTCATTCTTGAAGCTTGCTAGCATTGGCGTCAAGACTGGTGAAGAAGGCGAAATTCGAGCCTCTTGTCCAACAACTAATGCATGA

Protein Analysis

329

Amino Acids

35.39

Weight (kDa)

5.1

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24800 AT2G24800 AT4G31760
fragaria_vesca FvH4_2g41361
malus_domestica MD08G1051200.v1.1
prunus_persica Prupe.1G397400_v2.0.a1
pyrus_communis pycom15g04080
rosa_chinensis RchiOBHm_Chr6g0299121
rosa_multiflora Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa Rorug06G0285500
rosa_samantha Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana Rw6G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 489
AciI CCGC 1 cut(s) 707
AclWI GGATC 3 cut(s) 269, 595, 734
AcsI RAATTY 3 cut(s) 336, 402, 954
AcyI GRCGYC 1 cut(s) 930
AdeI CACNNNGTG 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 183, 798
AgsI TTSAA 5 cut(s) 335, 401, 468, 809, 913
AjnI CCWGG 2 cut(s) 181, 346
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
Alw21I GWGCWC 4 cut(s) 90, 132, 577, 690
Alw26I GTCTC 1 cut(s) 688
AlwI GGATC 3 cut(s) 269, 595, 734
AlwNI CAGNNNCTG 2 cut(s) 161, 353
AoxI GGCC 1 cut(s) 476
ApeKI GCWGC 3 cut(s) 65, 383, 461
ApoI RAATTY 3 cut(s) 336, 402, 954
Asp700I GAANNNNTTC 2 cut(s) 355, 454
AspLEI GCGC 2 cut(s) 605, 713
AspS9I GGNCC 2 cut(s) 413, 871
AsuHPI GGTGA 2 cut(s) 553, 953
AsuNHI GCTAGC 1 cut(s) 920
AvaII GGWCC 2 cut(s) 413, 871
BaeGI GKGCMC 1 cut(s) 704
BanII GRGCYC 5 cut(s) 90, 132, 577, 690, 901
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 4 cut(s) 90, 132, 577, 690
BbvI GCAGC 3 cut(s) 52, 370, 473
BccI CCATC 3 cut(s) 185, 440, 727
BciT130I CCWGG 2 cut(s) 183, 348
BcoDI GTCTC 1 cut(s) 688
BfaI CTAG 3 cut(s) 387, 851, 921
BfmI CTRYAG 2 cut(s) 417, 459
BglI GCCNNNNNGGC 1 cut(s) 708
BisI GCNGC 3 cut(s) 66, 384, 462
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 3 cut(s) 67, 385, 463
Bme1390I CCNGG 2 cut(s) 183, 348
Bme18I GGWCC 2 cut(s) 413, 871
BmgT120I GGNCC 2 cut(s) 413, 871
BmiI GGNNCC 2 cut(s) 414, 620
BmrFI CCNGG 2 cut(s) 183, 348
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 3 cut(s) 223, 245, 382
BmtI GCTAGC 1 cut(s) 924
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 883, 915
Bpu1102I GCTNAGC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 930
BsaJI CCNNGG 3 cut(s) 181, 182, 633
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 798
Bse1I ACTGG 3 cut(s) 262, 439, 943
BseBI CCWGG 2 cut(s) 183, 348
BseDI CCNNGG 3 cut(s) 181, 182, 633
BseGI GGATG 4 cut(s) 177, 514, 556, 659
BseLI CCNNNNNNNGG 2 cut(s) 183, 798
BseMII CTCAG 4 cut(s) 117, 120, 255, 914
BseNI ACTGG 3 cut(s) 262, 439, 943
BseRI GAGGAG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 704
BseXI GCAGC 3 cut(s) 52, 370, 473
BshFI GGCC 1 cut(s) 478
BsiHKAI GWGCWC 4 cut(s) 90, 132, 577, 690
BslFI GGGAC 2 cut(s) 274, 426
BslI CCNNNNNNNGG 2 cut(s) 183, 798
BsmAI GTCTC 1 cut(s) 688
BsmFI GGGAC 2 cut(s) 274, 426
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 1 cut(s) 478
Bsp1286I GDGCHC 6 cut(s) 90, 132, 577, 690, 704, 901
Bsp143I GATC 4 cut(s) 152, 274, 587, 739
Bsp1720I GCTNAGC 1 cut(s) 126
BspACI CCGC 1 cut(s) 707
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 4 cut(s) 118, 119, 256, 913
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 2 cut(s) 414, 620
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 3 cut(s) 269, 595, 734
BspQI GCTCTTC 2 cut(s) 209, 530
BsrI ACTGG 3 cut(s) 262, 439, 943
BssECI CCNNGG 3 cut(s) 181, 182, 633
BssMI GATC 4 cut(s) 152, 274, 587, 739
BssNI GRCGYC 1 cut(s) 930
BssT1I CCWWGG 1 cut(s) 633
Bst2UI CCWGG 2 cut(s) 183, 348
Bst4CI ACNGT 4 cut(s) 148, 355, 699, 730
Bst6I CTCTTC 2 cut(s) 209, 530
BstACI GRCGYC 1 cut(s) 930
BstC8I GCNNGC 4 cut(s) 200, 709, 918, 922
BstDEI CTNAG 6 cut(s) 106, 126, 264, 664, 787, 900
BstF5I GGATG 4 cut(s) 177, 514, 556, 659
BstHHI GCGC 2 cut(s) 605, 713
BstKTI GATC 4 cut(s) 155, 277, 590, 742
BstMAI GTCTC 1 cut(s) 688
BstMBI GATC 4 cut(s) 152, 274, 587, 739
BstMWI GCNNNNNNNGC 4 cut(s) 71, 383, 392, 708
BstNI CCWGG 2 cut(s) 183, 348
BstSCI CCNGG 2 cut(s) 181, 346
BstSFI CTRYAG 2 cut(s) 417, 459
BstSLI GKGCMC 1 cut(s) 704
BstV1I GCAGC 3 cut(s) 52, 370, 473
BstV2I GAAGAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 478
BtsCI GGATG 4 cut(s) 177, 514, 556, 659
BtsIMutI CAGTG 3 cut(s) 312, 616, 704
Cac8I GCNNGC 4 cut(s) 200, 709, 918, 922
CaiI CAGNNNCTG 2 cut(s) 161, 353
CciI TCATGA 1 cut(s) 690
CfoI GCGC 2 cut(s) 605, 713
Cfr13I GGNCC 2 cut(s) 413, 871
CseI GACGC 1 cut(s) 919
CviAII CATG 6 cut(s) 35, 114, 133, 209, 691, 984
DdeI CTNAG 6 cut(s) 106, 126, 264, 664, 787, 900
DpnI GATC 4 cut(s) 154, 276, 589, 741
DpnII GATC 4 cut(s) 152, 274, 587, 739
DraIII CACNNNGTG 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 209, 530
EarI CTCTTC 2 cut(s) 209, 530
Ecl136II GAGCTC 4 cut(s) 88, 130, 575, 688
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 478
Eco24I GRGCYC 5 cut(s) 90, 132, 577, 690, 901
Eco47I GGWCC 2 cut(s) 413, 871
Eco53kI GAGCTC 4 cut(s) 88, 130, 575, 688
EcoICRI GAGCTC 4 cut(s) 88, 130, 575, 688
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 181, 346
EcoT14I CCWWGG 1 cut(s) 633
EcoT22I ATGCAT 2 cut(s) 238, 985
EcoT38I GRGCYC 5 cut(s) 90, 132, 577, 690, 901
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 6 cut(s) 38, 117, 136, 212, 694, 987
FaiI YATR 9 cut(s) 36, 58, 115, 134, 167, 210, 678, 692, 985
FaqI GGGAC 2 cut(s) 274, 426
FatI CATG 6 cut(s) 34, 113, 132, 208, 690, 983
FauI CCCGC 1 cut(s) 700
FblI GTMKAC 1 cut(s) 489
Fnu4HI GCNGC 3 cut(s) 66, 384, 462
FokI GGATG 4 cut(s) 164, 521, 563, 646
FriOI GRGCYC 5 cut(s) 90, 132, 577, 690, 901
Fsp4HI GCNGC 3 cut(s) 66, 384, 462
FspBI CTAG 3 cut(s) 387, 851, 921
GlaI GCGC 2 cut(s) 604, 712
GluI GCNGC 3 cut(s) 66, 384, 462
HaeIII GGCC 1 cut(s) 478
HgaI GACGC 1 cut(s) 919
HhaI GCGC 2 cut(s) 605, 713
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 6 cut(s) 38, 117, 136, 212, 694, 987
Hin6I GCGC 2 cut(s) 603, 711
HinP1I GCGC 2 cut(s) 603, 711
HindIII AAGCTT 2 cut(s) 188, 914
HinfI GANTC 4 cut(s) 314, 427, 629, 815
HphI GGTGA 2 cut(s) 553, 953
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 5 cut(s) 140, 152, 163, 426, 814
Hpy188III TCNNGA 4 cut(s) 570, 691, 910, 934
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 3 cut(s) 31, 129, 941
HpyCH4III ACNGT 4 cut(s) 148, 355, 699, 730
HpyCH4V TGCA 5 cut(s) 236, 461, 680, 866, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 383, 392, 708
HpyF3I CTNAG 6 cut(s) 106, 126, 264, 664, 787, 900
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 6 cut(s) 38, 117, 136, 212, 694, 987
HspAI GCGC 2 cut(s) 603, 711
Kzo9I GATC 4 cut(s) 152, 274, 587, 739
LguI GCTCTTC 2 cut(s) 209, 530
LmnI GCTCC 2 cut(s) 572, 685
Lsp1109I GCAGC 3 cut(s) 52, 370, 473
LweI GCATC 3 cut(s) 223, 245, 382
MaeI CTAG 3 cut(s) 387, 851, 921
MaeIII GTNAC 2 cut(s) 559, 611
MalI GATC 4 cut(s) 154, 276, 589, 741
MboI GATC 4 cut(s) 152, 274, 587, 739
MboII GAAGA 5 cut(s) 34, 185, 196, 517, 956
MhlI GDGCHC 6 cut(s) 90, 132, 577, 690, 704, 901
MluCI AATT 4 cut(s) 336, 402, 735, 954
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 455, 646
MnlI CCTC 5 cut(s) 217, 290, 676, 791, 973
Mph1103I ATGCAT 2 cut(s) 238, 985
MroXI GAANNNNTTC 2 cut(s) 355, 454
MseI TTAA 2 cut(s) 519, 827
MspR9I CCNGG 2 cut(s) 183, 348
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 2 cut(s) 183, 348
MwoI GCNNNNNNNGC 4 cut(s) 71, 383, 392, 708
NdeII GATC 4 cut(s) 152, 274, 587, 739
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 6 cut(s) 38, 117, 136, 212, 694, 987
NlaIV GGNNCC 2 cut(s) 414, 620
NmuCI GTSAC 2 cut(s) 559, 611
NsiI ATGCAT 2 cut(s) 238, 985
PagI TCATGA 1 cut(s) 690
PasI CCCWGGG 1 cut(s) 182
PceI AGGCCT 1 cut(s) 478
PciSI GCTCTTC 2 cut(s) 209, 530
PctI GAATGC 1 cut(s) 605
PdmI GAANNNNTTC 2 cut(s) 355, 454
PfeI GAWTC 3 cut(s) 314, 427, 815
PflFI GACNNNGTC 1 cut(s) 557
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 3 cut(s) 67, 385, 463
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PpuMI RGGWCCY 1 cut(s) 413
Psp124BI GAGCTC 4 cut(s) 90, 132, 577, 690
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 181, 346
PspGI CCWGG 2 cut(s) 181, 346
PspN4I GGNNCC 2 cut(s) 414, 620
PspPI GGNCC 2 cut(s) 413, 871
PspPPI RGGWCCY 1 cut(s) 413
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 2 cut(s) 161, 353
PsyI GACNNNGTC 1 cut(s) 557
SacI GAGCTC 4 cut(s) 90, 132, 577, 690
SapI GCTCTTC 2 cut(s) 209, 530
SaqAI TTAA 2 cut(s) 519, 827
SatI GCNGC 3 cut(s) 66, 384, 462
Sau3AI GATC 4 cut(s) 152, 274, 587, 739
Sau96I GGNCC 2 cut(s) 413, 871
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 2 cut(s) 183, 348
SduI GDGCHC 6 cut(s) 90, 132, 577, 690, 704, 901
SfaNI GCATC 3 cut(s) 223, 245, 382
SfcI CTRYAG 2 cut(s) 417, 459
SinI GGWCC 2 cut(s) 413, 871
Sse9I AATT 4 cut(s) 336, 402, 735, 954
SseBI AGGCCT 1 cut(s) 478
SsiI CCGC 1 cut(s) 707
SspI AATATT 1 cut(s) 484
SspMI CTAG 3 cut(s) 387, 851, 921
SstI GAGCTC 4 cut(s) 90, 132, 577, 690
StuI AGGCCT 1 cut(s) 478
StyD4I CCNGG 2 cut(s) 181, 346
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 4 cut(s) 148, 355, 699, 730
TaqI TCGA 2 cut(s) 762, 958
TasI AATT 4 cut(s) 336, 402, 735, 954
TfiI GAWTC 3 cut(s) 314, 427, 815
Tru1I TTAA 2 cut(s) 519, 827
Tru9I TTAA 2 cut(s) 519, 827
TscAI CASTG 3 cut(s) 312, 616, 704
TseFI GTSAC 2 cut(s) 559, 611
TseI GCWGC 3 cut(s) 65, 383, 461
Tsp45I GTSAC 2 cut(s) 559, 611
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 808
TspRI CASTG 3 cut(s) 312, 616, 704
Tth111I GACNNNGTC 1 cut(s) 557
VpaK11BI GGWCC 2 cut(s) 413, 871
XapI RAATTY 3 cut(s) 336, 402, 954
XmiI GTMKAC 1 cut(s) 489
XmnI GAANNNNTTC 2 cut(s) 355, 454
XspI CTAG 3 cut(s) 387, 851, 921
Zsp2I ATGCAT 2 cut(s) 238, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.