Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012955

Physical Location & Seq

Genomic Coordinates Forward (+)

51807084 .. 51808251

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG254300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCAGAATCTTCGGAAGTATCCAGGAGTCCTTTTCCATCCAGCAATAGAGGAGCTCACACTATAGGAGCAGCTCATTGCAGTGCATTCAGTGACCGGTTCCAAGAAGACTCGAAAGGAAAATTCACACTCATTGACACATCTTTAGACAATGGCTATGCAGAGAAGCTTATGAAACAGTGCCCTCCAGGCGCAAATCCATCTATAACAGTCCAAAATGATCCTGAAACTTCCTTTGTTTTTGATAATCATTACTACGGCAATCTGTTGGCCCACAGAGGGCTGTTTCAATCAGATTCTGTCCTGTTCACCGACAGTAGATCAACAGGGCCGGACCTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

114

Amino Acids

12.49

Weight (kDa)

5.41

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 108	6.7e-22	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24800 AT2G24800 AT4G31760
fragaria_vesca	FvH4_2g41361
malus_domestica	MD08G1051200.v1.1
prunus_persica	Prupe.1G397400_v2.0.a1
pyrus_communis	pycom15g04080
rosa_chinensis	RchiOBHm_Chr6g0299121
rosa_multiflora	Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa	Rorug06G0285500
rosa_samantha	Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana	Rw6G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	23, 187
AluBI	AGCT	3 cut(s)	56, 74, 169
AluI	AGCT	3 cut(s)	56, 74, 169
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	270, 329
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	122
AsiGI	ACCGGT	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	3 cut(s)	271, 329, 334
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	334
AxyI	CCTNAGG	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	2 cut(s)	46, 208
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	25, 189
BciVI	GTATCC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	25, 189
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	3 cut(s)	271, 329, 334
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	25, 189
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	25, 189
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	2 cut(s)	272, 331
BshTI	ACCGGT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	97, 332
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	272, 331
Bsp1286I	GDGCHC	2 cut(s)	58, 185
Bsp143I	GATC	2 cut(s)	220, 320
BspANI	GGCC	2 cut(s)	272, 331
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	2 cut(s)	220, 320
Bst2UI	CCWGG	2 cut(s)	25, 189
Bst4CI	ACNGT	3 cut(s)	180, 211, 317
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	2 cut(s)	223, 323
BstMBI	GATC	2 cut(s)	220, 320
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	2 cut(s)	25, 189
BstSCI	CCNGG	2 cut(s)	23, 187
BstSFI	CTRYAG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	272, 331
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	3 cut(s)	88, 97, 185
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	271, 329, 334
CspAI	ACCGGT	1 cut(s)	96
CviJI	RGCY	7 cut(s)	56, 74, 156, 169, 272, 283, 331
CviKI_1	RGCY	7 cut(s)	56, 74, 156, 169, 272, 283, 331
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	222, 322
DpnII	GATC	2 cut(s)	220, 320
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	23, 187
EcoT38I	GRGCYC	1 cut(s)	58
FaiI	YATR	4 cut(s)	65, 159, 173, 206
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	272, 331
HapII	CCGG	2 cut(s)	97, 332
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	8, 28, 110, 296
HpaII	CCGG	2 cut(s)	97, 332
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	3 cut(s)	7, 16, 295
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	309
HpyCH4III	ACNGT	3 cut(s)	180, 211, 317
HpyCH4V	TGCA	3 cut(s)	81, 86, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	1 cut(s)	338
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	220, 320
LmnI	GCTCC	2 cut(s)	53, 68
LpnPI	CCDG	9 cut(s)	10, 37, 55, 110, 174, 201, 237, 312, 317
Lsp1109I	GCAGC	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	222, 322
MboI	GATC	2 cut(s)	220, 320
MboII	GAAGA	2 cut(s)	3, 119
MhlI	GDGCHC	2 cut(s)	58, 185
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	37, 104
MnlI	CCTC	4 cut(s)	44, 195, 272, 333
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	2 cut(s)	97, 332
MspR9I	CCNGG	2 cut(s)	25, 189
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	2 cut(s)	25, 189
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	2 cut(s)	220, 320
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	8, 296
PfoI	TCCNGGA	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	36, 104
PpsI	GAGTC	2 cut(s)	36, 104
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	23, 187
PspGI	CCWGG	2 cut(s)	23, 187
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	271, 329, 334
PstNI	CAGNNNCTG	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	220, 320
Sau96I	GGNCC	3 cut(s)	271, 329, 334
SchI	GAGTC	2 cut(s)	37, 104
ScrFI	CCNGG	2 cut(s)	25, 189
SduI	GDGCHC	2 cut(s)	58, 185
SetI	ASST	5 cut(s)	58, 76, 171, 339, 344
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	1 cut(s)	122
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	23, 187
TaaI	ACNGT	3 cut(s)	180, 211, 317
TaqI	TCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	8, 296
TscAI	CASTG	3 cut(s)	88, 97, 185
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	3 cut(s)	88, 97, 185
VpaK11BI	GGWCC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.