Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012955

Physical Location & Seq

Genomic Coordinates Reverse (-)

59704614 .. 59705918

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG411000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGACCCTACTGTCCCGGGGAAGCTCCTACGCTTACTCTTCCATGACTGCTTTGTGGAGGGTTGTGATGCCTCTGTGCTTCTACAAGGAAATGGAACTGAGAGAAGCGATCCAGCAAACCAATCTCTGGGAGGGTTTTCAGTTATTGATTCAGCAAAAAGACTGCTTGAAATTTTCTGTCCAGGAACTGTTTCTTGTGCTGACATTGTTGCTTTGGCTGCTAGAGATGCTGTTGAACTTACGGGAGGACCCGTGGTTCATATTCCAACTGGTAGGCGAGATGGGAAGGTTTCATCAGCTTCAAATGTCAGGCCTAATATTGTAGATACAAGCTTTACAATGACTGAGATGATAAAGCTCTTCTCTTCTAAAGGCTTGTCTTTGGAGGACCTTGTAACCCTCTCAGGAGCTCACACTATAGGAGCAGCTCATTGCAGTGCATTCAGTGACCGGTTCCAAGAAGACTCGAAAGGAAAATTCACACTCATTGACACATCTTTAGACAACGGCTATGCTGAGAAGCTCATGAAACAGTGCCCTCCAGGCGCAAATCCATCTATAACAGTCCAAAATGATCCTGAAACTTCCTTTGTGTTTGATAATCATTACTACGGCAATCTCTTGGCCCACAGAGGGCTGTTTCAATCAGATTCTGTCCTGTTCACTGACAGTAGATCAAGCAAACAAGTGAAGAATTTTGCAGAAGACCAAGTTGGATTTTTTGAGAGTTGGGTTCAGTCATTCTTGAAGCTTACTAGCATTCATGTTAAGACAGGTGATGAAGGGGAAATTCGAGCATTTTGTCCTACACCTAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

273

Amino Acids

29.5

Weight (kDa)

5.23

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	2 - 236	2.9e-79	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24800 AT2G24800 AT4G31760
fragaria_vesca	FvH4_2g41361
malus_domestica	MD08G1051200.v1.1
prunus_persica	Prupe.1G397400_v2.0.a1
pyrus_communis	pycom15g04080
rosa_chinensis	RchiOBHm_Chr6g0299121
rosa_multiflora	Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa	Rorug06G0285500
rosa_samantha	Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana	Rw6G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccB7I	CCANNNNNTGG	1 cut(s)	127
AclWI	GGATC	2 cut(s)	104, 569
AcsI	RAATTY	4 cut(s)	171, 476, 694, 789
AfiI	CCNNNNNNNGG	2 cut(s)	127, 633
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	5 cut(s)	170, 236, 303, 644, 748
AjnI	CCWGG	2 cut(s)	181, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
AluBI	AGCT	8 cut(s)	25, 299, 333, 358, 410, 428, 523, 751
AluI	AGCT	8 cut(s)	25, 299, 333, 358, 410, 428, 523, 751
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	104, 569
AlwNI	CAGNNNCTG	2 cut(s)	188, 653
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	2 cut(s)	311, 624
ApeKI	GCWGC	2 cut(s)	218, 425
ApoI	RAATTY	4 cut(s)	171, 476, 694, 789
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	4 cut(s)	4, 248, 388, 625
AsuC2I	CCSGG	2 cut(s)	17, 18
AsuHPI	GGTGA	1 cut(s)	788
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	4, 248, 388
BaeGI	GKGCMC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	412
BbsI	GAAGAC	2 cut(s)	468, 711
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	205, 437
BccI	CCATC	2 cut(s)	275, 562
BceAI	ACGGC	2 cut(s)	523, 628
BciT130I	CCWGG	2 cut(s)	183, 543
BcnI	CCSGG	2 cut(s)	17, 18
BfaI	CTAG	2 cut(s)	222, 756
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	219, 426
BlsI	GCNGC	2 cut(s)	220, 427
Bme1390I	CCNGG	4 cut(s)	17, 18, 183, 543
Bme18I	GGWCC	3 cut(s)	4, 248, 388
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	4 cut(s)	4, 248, 388, 625
BmiI	GGNNCC	3 cut(s)	6, 250, 455
BmrFI	CCNGG	4 cut(s)	17, 18, 183, 543
BmsI	GCATC	2 cut(s)	58, 217
BpiI	GAAGAC	2 cut(s)	468, 711
BpmI	CTGGAG	1 cut(s)	525
BpuMI	CCSGG	2 cut(s)	17, 18
BsaJI	CCNNGG	3 cut(s)	16, 17, 252
BsaWI	WCCGGW	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 633
Bse118I	RCCGGY	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	2 cut(s)	183, 543
BseDI	CCNNGG	3 cut(s)	16, 17, 252
BseLI	CCNNNNNNNGG	2 cut(s)	127, 633
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	90, 336, 417, 507
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	205, 437
BshFI	GGCC	2 cut(s)	313, 626
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	17, 451
BslI	CCNNNNNNNGG	2 cut(s)	127, 633
BsmI	GAATGC	2 cut(s)	440, 759
BsnI	GGCC	2 cut(s)	313, 626
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	2 cut(s)	412, 539
Bsp143I	GATC	3 cut(s)	109, 574, 674
BspANI	GGCC	2 cut(s)	313, 626
BspCNI	CTCAG	4 cut(s)	91, 337, 416, 508
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	3 cut(s)	6, 250, 455
BspPI	GGATC	2 cut(s)	104, 569
BspQI	GCTCTTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	450
BssECI	CCNNGG	3 cut(s)	16, 17, 252
BssMI	GATC	3 cut(s)	109, 574, 674
Bst2UI	CCWGG	2 cut(s)	183, 543
Bst4CI	ACNGT	5 cut(s)	13, 190, 534, 565, 671
Bst6I	CTCTTC	3 cut(s)	44, 365, 370
BstDEI	CTNAG	4 cut(s)	99, 345, 403, 516
BstDSI	CCRYGG	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	112, 577, 677
BstMBI	GATC	3 cut(s)	109, 574, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 227, 543
BstNI	CCWGG	2 cut(s)	183, 543
BstSCI	CCNGG	4 cut(s)	15, 16, 181, 541
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	2 cut(s)	205, 437
BstV2I	GAAGAC	2 cut(s)	468, 711
BsuRI	GGCC	2 cut(s)	313, 626
BtgI	CCRYGG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	4 cut(s)	442, 451, 539, 663
CaiI	CAGNNNCTG	2 cut(s)	188, 653
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	450
Cfr13I	GGNCC	4 cut(s)	4, 248, 388, 625
Cfr9I	CCCGGG	1 cut(s)	16
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	4 cut(s)	44, 526, 764, 819
DdeI	CTNAG	4 cut(s)	99, 345, 403, 516
DpnI	GATC	3 cut(s)	111, 576, 676
DpnII	GATC	3 cut(s)	109, 574, 674
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	3 cut(s)	44, 365, 370
EarI	CTCTTC	3 cut(s)	44, 365, 370
Ecl136II	GAGCTC	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	4, 248, 388
Eco53kI	GAGCTC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	410
EcoO109I	RGGNCCY	2 cut(s)	248, 388
EcoRII	CCWGG	2 cut(s)	181, 541
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	412
FaeI	CATG	4 cut(s)	47, 529, 767, 822
FaiI	YATR	8 cut(s)	45, 261, 419, 513, 527, 560, 765, 820
FatI	CATG	4 cut(s)	43, 525, 763, 818
Fnu4HI	GCNGC	2 cut(s)	219, 426
FriOI	GRGCYC	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	219, 426
FspBI	CTAG	2 cut(s)	222, 756
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	2 cut(s)	219, 426
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	313, 626
HapII	CCGG	2 cut(s)	17, 451
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	4 cut(s)	47, 529, 767, 822
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	2 cut(s)	331, 749
HinfI	GANTC	3 cut(s)	149, 464, 650
HpaII	CCGG	2 cut(s)	17, 451
HphI	GGTGA	1 cut(s)	788
Hpy166II	GTNNAC	1 cut(s)	663
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	4 cut(s)	405, 526, 578, 745
Hpy8I	GTNNAC	1 cut(s)	663
HpyAV	CCTTC	2 cut(s)	280, 776
HpyCH4III	ACNGT	5 cut(s)	13, 190, 534, 565, 671
HpyCH4V	TGCA	4 cut(s)	435, 440, 701, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 227, 543
HpyF3I	CTNAG	4 cut(s)	99, 345, 403, 516
Hsp92II	CATG	4 cut(s)	47, 529, 767, 822
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	109, 574, 674
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	3 cut(s)	30, 407, 422
Lsp1109I	GCAGC	2 cut(s)	205, 437
LweI	GCATC	2 cut(s)	58, 217
MaeI	CTAG	2 cut(s)	222, 756
MaeIII	GTNAC	2 cut(s)	394, 446
MalI	GATC	3 cut(s)	111, 576, 676
MboI	GATC	3 cut(s)	109, 574, 674
MboII	GAAGA	6 cut(s)	31, 352, 357, 473, 703, 716
MhlI	GDGCHC	2 cut(s)	412, 539
MluCI	AATT	4 cut(s)	171, 476, 694, 789
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	290, 694
MnlI	CCTC	8 cut(s)	52, 82, 125, 239, 379, 410, 549, 626
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	1 cut(s)	435
MspI	CCGG	2 cut(s)	17, 451
MspR9I	CCNGG	4 cut(s)	17, 18, 183, 543
Mva1269I	GAATGC	2 cut(s)	440, 759
MvaI	CCWGG	2 cut(s)	183, 543
MwoI	GCNNNNNNNGC	3 cut(s)	218, 227, 543
NciI	CCSGG	2 cut(s)	17, 18
NdeII	GATC	3 cut(s)	109, 574, 674
NlaIII	CATG	4 cut(s)	47, 529, 767, 822
NlaIV	GGNNCC	3 cut(s)	6, 250, 455
NmuCI	GTSAC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	820
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	365
PctI	GAATGC	2 cut(s)	440, 759
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	149, 650
PflMI	CCANNNNNTGG	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	181
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	220, 427
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PpuMI	RGGWCCY	2 cut(s)	248, 388
Psp124BI	GAGCTC	1 cut(s)	412
Psp5II	RGGWCCY	2 cut(s)	248, 388
Psp6I	CCWGG	2 cut(s)	181, 541
PspGI	CCWGG	2 cut(s)	181, 541
PspN4I	GGNNCC	3 cut(s)	6, 250, 455
PspPI	GGNCC	4 cut(s)	4, 248, 388, 625
PspPPI	RGGWCCY	2 cut(s)	248, 388
PstNI	CAGNNNCTG	2 cut(s)	188, 653
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	2 cut(s)	219, 426
Sau3AI	GATC	3 cut(s)	109, 574, 674
Sau96I	GGNCC	4 cut(s)	4, 248, 388, 625
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	4 cut(s)	17, 18, 183, 543
SduI	GDGCHC	2 cut(s)	412, 539
SfaNI	GCATC	2 cut(s)	58, 217
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	3 cut(s)	4, 248, 388
SmaI	CCCGGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	171, 476, 694, 789
SseBI	AGGCCT	1 cut(s)	313
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	222, 756
SstI	GAGCTC	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	4 cut(s)	15, 16, 181, 541
TaaI	ACNGT	5 cut(s)	13, 190, 534, 565, 671
TaqI	TCGA	2 cut(s)	467, 793
TasI	AATT	4 cut(s)	171, 476, 694, 789
TfiI	GAWTC	2 cut(s)	149, 650
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	4 cut(s)	442, 451, 539, 670
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	218, 425
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	248, 282, 542, 752, 795
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	4 cut(s)	442, 451, 539, 670
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	3 cut(s)	4, 248, 388
XapI	RAATTY	4 cut(s)	171, 476, 694, 789
XmaI	CCCGGG	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	2 cut(s)	222, 756
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.