Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007483.1

Orthogroup ID

OG0012955

Physical Location & Seq

Genomic Coordinates Reverse (-)

30686 .. 31525

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007483.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgactggaaaacagacgggaggacccgtggttcatattccaactggtaggcgagatgggaaggtttcatcagcttcaaatgtcaggcctaatcttgtagatacaagctttacaatgactgagatgataaagctcttctcttctaaaggcttgtctttggaggaccttgtaaccctctcaggagctcacactataggagcagctcattgcagtgcattcagtgaccggttccaagaagactcgaaaggaaaattcacactcattgacacatctttagacaacggctatgcagagaagctcatgaaacagtgccctccaggcgcaaatccatctataacagtccaaaatgatcctgaaacttcctttgtgtttgataatcattactacggcaatctcttggcccacagagggctgtttcaatcagattctgtcctgttcactgacagtagatcaagcaaacaagtgaagaattttgcagaagaccaagttggattttttgagagttgggttcagtcattcttgaagcttactagcattcatgttaagacaggtgataaaggggaaattcgagcattttgtcctacagctaatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

198

Amino Acids

21.61

Weight (kDa)

6.58

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24800 AT2G24800 AT4G31760
fragaria_vesca	FvH4_2g41361
malus_domestica	MD08G1051200.v1.1
prunus_persica	Prupe.1G397400_v2.0.a1
pyrus_communis	pycom15g04080
rosa_chinensis	RchiOBHm_Chr6g0299121
rosa_multiflora	Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa	Rorug06G0285500
rosa_samantha	Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana	Rw6G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	3 cut(s)	251, 469, 564
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgeI	ACCGGT	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	78, 419, 523
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	8 cut(s)	74, 108, 133, 185, 203, 298, 526, 587
AluI	AGCT	8 cut(s)	74, 108, 133, 185, 203, 298, 526, 587
Alw21I	GWGCWC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	86, 399
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	251, 469, 564
AsiGI	ACCGGT	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	23, 163, 400
AsuHPI	GGTGA	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	23, 163
BaeGI	GKGCMC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	243, 486
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	50, 337
BceAI	ACGGC	2 cut(s)	298, 403
BciT130I	CCWGG	1 cut(s)	318
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	2 cut(s)	192, 582
BglI	GCCNNNNNGGC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	2 cut(s)	23, 163
BmgT120I	GGNCC	3 cut(s)	23, 163, 400
BmiI	GGNNCC	2 cut(s)	25, 230
BmrFI	CCNGG	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	243, 486
BpmI	CTGGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	10, 49
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	111, 192
BseNI	ACTGG	2 cut(s)	10, 49
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	212
BshFI	GGCC	2 cut(s)	88, 401
BshTI	ACCGGT	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmI	GAATGC	2 cut(s)	215, 534
BsnI	GGCC	2 cut(s)	88, 401
Bsp1286I	GDGCHC	2 cut(s)	187, 314
Bsp143I	GATC	2 cut(s)	349, 449
BspANI	GGCC	2 cut(s)	88, 401
BspCNI	CTCAG	2 cut(s)	112, 191
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	25, 230
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	10, 49
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	349, 449
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	309, 340, 446
Bst6I	CTCTTC	2 cut(s)	140, 145
BstDEI	CTNAG	2 cut(s)	120, 178
BstDSI	CCRYGG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	352, 452
BstMBI	GATC	2 cut(s)	349, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	2 cut(s)	192, 582
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	2 cut(s)	243, 486
BsuRI	GGCC	2 cut(s)	88, 401
BtgI	CCRYGG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	4 cut(s)	217, 226, 314, 438
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	3 cut(s)	23, 163, 400
CspAI	ACCGGT	1 cut(s)	225
CviAII	CATG	3 cut(s)	301, 539, 594
DdeI	CTNAG	2 cut(s)	120, 178
DpnI	GATC	2 cut(s)	351, 451
DpnII	GATC	2 cut(s)	349, 449
Eam1104I	CTCTTC	2 cut(s)	140, 145
EarI	CTCTTC	2 cut(s)	140, 145
Ecl136II	GAGCTC	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	23, 163
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoO109I	RGGNCCY	2 cut(s)	23, 163
EcoRII	CCWGG	1 cut(s)	316
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	187
FaeI	CATG	3 cut(s)	304, 542, 597
FaiI	YATR	7 cut(s)	36, 194, 288, 302, 335, 540, 595
FatI	CATG	3 cut(s)	300, 538, 593
Fnu4HI	GCNGC	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	88, 401
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	304, 542, 597
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	2 cut(s)	106, 524
HinfI	GANTC	2 cut(s)	239, 425
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	563
Hpy166II	GTNNAC	1 cut(s)	438
Hpy188I	TCNGA	1 cut(s)	424
Hpy188III	TCNNGA	4 cut(s)	180, 301, 353, 520
Hpy8I	GTNNAC	1 cut(s)	438
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	309, 340, 446
HpyCH4V	TGCA	5 cut(s)	210, 215, 290, 476, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	2 cut(s)	120, 178
Hsp92II	CATG	3 cut(s)	304, 542, 597
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	349, 449
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	182, 197
LpnPI	CCDG	9 cut(s)	30, 70, 165, 239, 303, 330, 366, 446, 534
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	169, 221
MalI	GATC	2 cut(s)	351, 451
MboI	GATC	2 cut(s)	349, 449
MboII	GAAGA	5 cut(s)	127, 132, 248, 478, 491
MhlI	GDGCHC	2 cut(s)	187, 314
MluCI	AATT	3 cut(s)	251, 469, 564
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	2 cut(s)	65, 469
MnlI	CCTC	5 cut(s)	14, 154, 185, 324, 401
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	215, 534
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	2 cut(s)	349, 449
NlaIII	CATG	3 cut(s)	304, 542, 597
NlaIV	GGNNCC	2 cut(s)	25, 230
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	595
PagI	TCATGA	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	140
PctI	GAATGC	2 cut(s)	215, 534
PfeI	GAWTC	1 cut(s)	425
PinAI	ACCGGT	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	2 cut(s)	23, 163
Psp124BI	GAGCTC	1 cut(s)	187
Psp5II	RGGWCCY	2 cut(s)	23, 163
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	25, 230
PspPI	GGNCC	3 cut(s)	23, 163, 400
PspPPI	RGGWCCY	2 cut(s)	23, 163
PstNI	CAGNNNCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	187
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	349, 449
Sau96I	GGNCC	3 cut(s)	23, 163, 400
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	187, 314
SfcI	CTRYAG	2 cut(s)	192, 582
SinI	GGWCC	2 cut(s)	23, 163
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	251, 469, 564
SseBI	AGGCCT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	187
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	309, 340, 446
TaqI	TCGA	2 cut(s)	242, 568
TasI	AATT	3 cut(s)	251, 469, 564
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	4 cut(s)	217, 226, 314, 445
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	23, 57, 317, 527
TspRI	CASTG	4 cut(s)	217, 226, 314, 445
VpaK11BI	GGWCC	2 cut(s)	23, 163
XapI	RAATTY	3 cut(s)	251, 469, 564
XspI	CTAG	1 cut(s)	531
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.