Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012955

Physical Location & Seq

Genomic Coordinates Reverse (-)

58825898 .. 58826753

Gene Structure 856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGATTGTGATGACTGGAAAACAGACGGGAGGACCCGTGGTTCATATTCCAACTGGTAGGCGAGATGGGAAGGTTTCATCAGCTTCCAATGTCAGGCCTAATATTGTAGATACAAGCTTTACAATGACTGAGATGATAAAGCTCTTCTCTTCTAAAGGCTTGTCTTTGGAGGACCTTGTAACCCTCTCAGGAGCTCACACTATAGGAGCAGCTCATTGCAGTGCATTCAGTGACCGGTTCCAAGAAGACTCGAAAGGAAAATTCACACTCATTGACATATCTTTAGACAATGGCTATGCAGAGAAGCTCATGAAACAGTGCCCTCCAGGCGCAAATCCATCTATAACAGTCCAAAATGATCCTGAAACTGCCTTTGTGTTTGATAATCATTACTACGGCAATCTATTGGCCCACAGAGGGCTGTTTCAATCAGATTCTGTCCTGTTCACCGACAGTAGATCCAGCAAACAAGTGAAGAATTTTGCAGAAGACCAAGTTGGATTTTTTGAGAGTTGGGTTCAGTCATTCTTGAAGCTTACTAGCATTCATGTTAAGACAGGTGATGAAGGGGAAATTCGAGCATTTTGTCCTACAGCTAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008419 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBR1 Metallophos peroxidase

Protein Analysis

202

Amino Acids

22.06

Weight (kDa)

6.05

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	9 - 165	5.1e-42	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24800 AT2G24800 AT4G31760
fragaria_vesca	FvH4_2g41361
malus_domestica	MD08G1051200.v1.1
prunus_persica	Prupe.1G397400_v2.0.a1
pyrus_communis	pycom15g04080
rosa_chinensis	RchiOBHm_Chr6g0299121
rosa_multiflora	Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa	Rorug06G0285500
rosa_samantha	Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana	Rw6G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	356, 456
AcsI	RAATTY	3 cut(s)	263, 481, 576
AfiI	CCNNNNNNNGG	2 cut(s)	96, 420
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	2 cut(s)	431, 535
AjnI	CCWGG	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	8 cut(s)	86, 120, 145, 197, 215, 310, 538, 599
AluI	AGCT	8 cut(s)	86, 120, 145, 197, 215, 310, 538, 599
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	356, 456
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	98, 411
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	3 cut(s)	263, 481, 576
AsiGI	ACCGGT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	3 cut(s)	35, 175, 412
AsuHPI	GGTGA	2 cut(s)	442, 575
AvaII	GGWCC	2 cut(s)	35, 175
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	2 cut(s)	255, 498
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	62, 349
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	330
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	2 cut(s)	204, 594
BglI	GCCNNNNNGGC	1 cut(s)	330
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	35, 175
BmgT120I	GGNCC	3 cut(s)	35, 175, 412
BmiI	GGNNCC	2 cut(s)	37, 242
BmrFI	CCNGG	1 cut(s)	330
BpiI	GAAGAC	2 cut(s)	255, 498
BpmI	CTGGAG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 420
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	22, 61
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	2 cut(s)	96, 420
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	123, 204
BseNI	ACTGG	2 cut(s)	22, 61
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	100, 413
BshTI	ACCGGT	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	96, 420
BsmI	GAATGC	2 cut(s)	227, 546
BsnI	GGCC	2 cut(s)	100, 413
Bsp1286I	GDGCHC	2 cut(s)	199, 326
Bsp143I	GATC	2 cut(s)	361, 461
BspANI	GGCC	2 cut(s)	100, 413
BspCNI	CTCAG	2 cut(s)	124, 203
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	37, 242
BspPI	GGATC	2 cut(s)	356, 456
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	22, 61
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	361, 461
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	321, 352, 458
Bst6I	CTCTTC	2 cut(s)	152, 157
BstDEI	CTNAG	2 cut(s)	132, 190
BstDSI	CCRYGG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	364, 464
BstMBI	GATC	2 cut(s)	361, 461
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	204, 594
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	2 cut(s)	255, 498
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	100, 413
BtgI	CCRYGG	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	3 cut(s)	229, 238, 326
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	35, 175, 412
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	3 cut(s)	313, 551, 606
DdeI	CTNAG	2 cut(s)	132, 190
DpnI	GATC	2 cut(s)	363, 463
DpnII	GATC	2 cut(s)	361, 461
Eam1104I	CTCTTC	2 cut(s)	152, 157
EarI	CTCTTC	2 cut(s)	152, 157
Ecl136II	GAGCTC	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	35, 175
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	2 cut(s)	35, 175
EcoRII	CCWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	3 cut(s)	316, 554, 609
FaiI	YATR	8 cut(s)	48, 206, 281, 300, 314, 347, 552, 607
FatI	CATG	3 cut(s)	312, 550, 605
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	100, 413
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	316, 554, 609
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HindIII	AAGCTT	2 cut(s)	118, 536
HinfI	GANTC	2 cut(s)	251, 437
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	442, 575
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	4 cut(s)	192, 313, 365, 532
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	2 cut(s)	67, 563
HpyCH4III	ACNGT	3 cut(s)	321, 352, 458
HpyCH4V	TGCA	5 cut(s)	222, 227, 302, 488, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	2 cut(s)	132, 190
Hsp92II	CATG	3 cut(s)	316, 554, 609
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	361, 461
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	194, 209
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	181, 233
MalI	GATC	2 cut(s)	363, 463
MboI	GATC	2 cut(s)	361, 461
MboII	GAAGA	5 cut(s)	139, 144, 260, 490, 503
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	2 cut(s)	199, 326
MluCI	AATT	3 cut(s)	263, 481, 576
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	77, 481
MnlI	CCTC	5 cut(s)	26, 166, 197, 336, 413
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	227, 546
MvaI	CCWGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	2 cut(s)	361, 461
NlaIII	CATG	3 cut(s)	316, 554, 609
NlaIV	GGNNCC	2 cut(s)	37, 242
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	607
PagI	TCATGA	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	152
PctI	GAATGC	2 cut(s)	227, 546
PfeI	GAWTC	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	245
PpsI	GAGTC	1 cut(s)	245
PpuMI	RGGWCCY	2 cut(s)	35, 175
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	2 cut(s)	35, 175
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	2 cut(s)	37, 242
PspPI	GGNCC	3 cut(s)	35, 175, 412
PspPPI	RGGWCCY	2 cut(s)	35, 175
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	361, 461
Sau96I	GGNCC	3 cut(s)	35, 175, 412
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	199, 326
SfcI	CTRYAG	2 cut(s)	204, 594
SinI	GGWCC	2 cut(s)	35, 175
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	3 cut(s)	263, 481, 576
SseBI	AGGCCT	1 cut(s)	100
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	321, 352, 458
TaqI	TCGA	2 cut(s)	254, 580
TasI	AATT	3 cut(s)	263, 481, 576
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	3 cut(s)	229, 238, 326
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	35, 69, 329, 539, 582
TspRI	CASTG	3 cut(s)	229, 238, 326
VpaK11BI	GGWCC	2 cut(s)	35, 175
XapI	RAATTY	3 cut(s)	263, 481, 576
XspI	CTAG	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.