AT2G25060

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012899
Physical Location & Seq
Forward (+)
10662190 .. 10663103
914 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25060.1

Sequence Viewer

Length: 549 bp
ATGTTTCTATCGGCATCTATGGCTTCTTCTTCACTTCACGTTGCTATCTTCTCTTTAATCTTCTTATTCTCACTCGCCGCTGCAAATGAAGTCACCGTCGGTGGAAAATCCGGCGACTGGAAGATCCCTCCTTCCTCTTCTTACTCATTCACTGAGTGGGCTCAAAAAGCTCGCTTCAAAGTCGGCGACTTTATTGTTTTCCGGTATGAATCTGGTAAAGACTCTGTTTTGGAAGTAACAAAAGAAGCTTACAACAGCTGCAACACCACGAACCCTTTGGCTAACTACACTGATGGAGAAACCAAGGTGAAATTGGACAGGTCTGGTCCTTTCTACTTCATTAGTGGAGCTAATGGTCACTGTGAGAAAGGTCAGAAGCTGAGCCTTGTTGTGATCAGTCCTCGTCACAGTGTCATCTCTCCAGCTCCTTCTCCGGTTGAATTCGAAGATGGTCCAGCTTTGGCTCCAGCTCCCATTAGCGGCTCAGTTAGGCTTGGTGGTTGTTATGTTGTGTTAGGTCTTGTTCTTGGTCTATGTGCTTGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

182

Amino Acids

19.48

Weight (kDa)

6.82

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 125 1.3e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 78, 480
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 440
AdeI CACNNNGTG 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 117, 479
AgsI TTSAA 2 cut(s) 178, 440
AluBI AGCT 8 cut(s) 170, 248, 258, 350, 379, 425, 458, 470
AluI AGCT 8 cut(s) 170, 248, 258, 350, 379, 425, 458, 470
AlwI GGATC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 80, 258
ApoI RAATTY 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 326, 452
AsuHPI GGTGA 2 cut(s) 85, 319
AsuII TTCGAA 1 cut(s) 444
AvaII GGWCC 2 cut(s) 326, 452
BanII GRGCYC 1 cut(s) 163
BbvI GCAGC 2 cut(s) 67, 245
BccI CCATC 2 cut(s) 287, 443
BclI TGATCA 1 cut(s) 393
BisI GCNGC 4 cut(s) 78, 81, 259, 481
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 4 cut(s) 79, 82, 260, 482
Bme18I GGWCC 2 cut(s) 326, 452
BmgT120I GGNCC 2 cut(s) 326, 452
BmiI GGNNCC 1 cut(s) 465
BmsI GCATC 1 cut(s) 23
BpmI CTGGAG 2 cut(s) 405, 450
Bpu1102I GCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 2 cut(s) 201, 433
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 479
Bse1I ACTGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 117, 479
BseMII CTCAG 3 cut(s) 144, 371, 498
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 67, 245
BsiSI CCGG 3 cut(s) 111, 202, 434
BslI CCNNNNNNNGG 2 cut(s) 117, 479
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 123, 393
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 2 cut(s) 78, 480
BspCNI CTCAG 3 cut(s) 145, 372, 497
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 444
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 123, 393
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 97, 362, 410
Bst6I CTCTTC 1 cut(s) 142
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 153, 380, 484
BstKTI GATC 2 cut(s) 126, 396
BstMBI GATC 2 cut(s) 123, 393
BstMWI GCNNNNNNNGC 2 cut(s) 20, 167
BstV1I GCAGC 2 cut(s) 67, 245
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 150, 288, 358, 415
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 326, 452
DdeI CTNAG 3 cut(s) 153, 380, 484
DpnI GATC 2 cut(s) 125, 395
DpnII GATC 2 cut(s) 123, 393
DraIII CACNNNGTG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 326, 452
EcoRI GAATTC 1 cut(s) 440
EcoT14I CCWWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 303
FaiI YATR 4 cut(s) 20, 207, 507, 535
FbaI TGATCA 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 78, 81, 259, 481
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 4 cut(s) 78, 81, 259, 481
GluI GCNGC 4 cut(s) 78, 81, 259, 481
GsuI CTGGAG 2 cut(s) 405, 450
HapII CCGG 3 cut(s) 111, 202, 434
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 2 cut(s) 209, 221
HpaII CCGG 3 cut(s) 111, 202, 434
HphI GGTGA 2 cut(s) 85, 319
Hpy188I TCNGA 2 cut(s) 375, 548
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 2 cut(s) 141, 438
HpyCH4III ACNGT 3 cut(s) 97, 362, 410
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 83, 261
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 167
HpyF3I CTNAG 3 cut(s) 153, 380, 484
HpySE526I ACGT 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 123, 393
LmnI GCTCC 4 cut(s) 347, 430, 469, 475
Lsp1109I GCAGC 2 cut(s) 67, 245
LweI GCATC 1 cut(s) 23
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 4 cut(s) 91, 235, 356, 404
MalI GATC 2 cut(s) 125, 395
MboI GATC 2 cut(s) 123, 393
MboII GAAGA 7 cut(s) 18, 21, 40, 52, 129, 133, 458
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 2 cut(s) 311, 440
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 3 cut(s) 138, 145, 411
MseI TTAA 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 80, 258
MspI CCGG 3 cut(s) 111, 202, 434
MwoI GCNNNNNNNGC 2 cut(s) 20, 167
NdeII GATC 2 cut(s) 123, 393
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 3 cut(s) 91, 356, 404
NspV TTCGAA 1 cut(s) 444
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 4 cut(s) 79, 82, 260, 482
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 326, 452
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 4 cut(s) 78, 81, 259, 481
Sau3AI GATC 2 cut(s) 123, 393
Sau96I GGNCC 2 cut(s) 326, 452
SchI GAGTC 1 cut(s) 215
SduI GDGCHC 1 cut(s) 163
SfaNI GCATC 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 326, 452
Sse9I AATT 2 cut(s) 311, 440
SsiI CCGC 2 cut(s) 78, 480
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 97, 362, 410
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 444
TasI AATT 2 cut(s) 311, 440
TauI GCSGC 2 cut(s) 80, 483
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 4 cut(s) 157, 295, 365, 415
TseFI GTSAC 3 cut(s) 91, 356, 404
TseI GCWGC 2 cut(s) 80, 258
Tsp45I GTSAC 3 cut(s) 91, 356, 404
TspDTI ATGAA 3 cut(s) 102, 222, 328
TspRI CASTG 4 cut(s) 157, 295, 365, 415
VpaK11BI GGWCC 2 cut(s) 326, 452
XapI RAATTY 1 cut(s) 440
XcmI CCANNNNNNNNNTGG 2 cut(s) 274, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.