RLG00000011437

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012899
Physical Location & Seq
Forward (+)
9458820 .. 9459463
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011437

Sequence Viewer

Length: 528 bp
ATGGCTGGGTTTTCATCGAGAGCTGCTTCTGTGCTTGTCGTGTTTCTCGTCTTGTTGAGCTTTTCAGAAGCCAGAGAGTTTTTGGTGGGTGGCAAAGCAGACGCATGGGCGGTCCCTTCTTCTGAATCCCAATCTCTCTCAACAAATGGGCCGAAAGCAAACGTGTGGAAATATGACAGTGCAAAAGACTCGGTCTTGCATGTGACCAAGGATGACTATGTTAACTGCAACATGTCAAGCCCAATCAAGCAGTACAAGGATGGTGAGACCAAGATTGTGCTCGACAAACCAGGACCCTTCTATTTCATTAGCGGAACCAAGGATCACTGTGAAAAGGGACAGAAGCTCGTCGTTGTCGTTATATCTCCCAGAAACAGGGCCTCTACCATCTCTCCGGCACCTTCTCCCGCGGTCGAGATCGACGGTCCTGCCGTTGCTCCGGCTCCGACTAGCACTGCTTCGCCTTTCAAGGCCGCTGGTGTCCTTGTTGTGGCACTAATCGGGTTTTCGTCAGCTCTCCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

176

Amino Acids

18.4

Weight (kDa)

8.52

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 55 - 114 2e-16 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 397
AccII CGCG 1 cut(s) 410
AciI CCGC 5 cut(s) 110, 312, 408, 410, 474
AclWI GGATC 1 cut(s) 330
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 375, 490
AflIII ACRYGT 2 cut(s) 162, 231
AgsI TTSAA 1 cut(s) 469
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 23, 60, 346, 515
AluI AGCT 4 cut(s) 23, 60, 346, 515
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 330
AoxI GGCC 3 cut(s) 149, 378, 471
ApeKI GCWGC 1 cut(s) 23
AspS9I GGNCC 5 cut(s) 112, 149, 293, 378, 425
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 3 cut(s) 112, 293, 425
BanI GGYRCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 10
BccI CCATC 2 cut(s) 254, 395
BceAI ACGGC 1 cut(s) 416
BcgI CGANNNNNNTGC 4 cut(s) 171, 205, 410, 444
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 450
BisI GCNGC 2 cut(s) 24, 474
BlsI GCNGC 2 cut(s) 25, 475
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 3 cut(s) 112, 293, 425
BmgT120I GGNCC 5 cut(s) 112, 149, 293, 378, 425
BmiI GGNNCC 5 cut(s) 114, 295, 316, 399, 444
BmrFI CCNGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 207, 318, 408
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 490
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 207, 318, 408
BseGI GGATG 2 cut(s) 217, 265
BseLI CCNNNNNNNGG 2 cut(s) 375, 490
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 10
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 414
BshFI GGCC 3 cut(s) 151, 380, 473
BshNI GGYRCC 1 cut(s) 397
BsiEI CGRYCG 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 395, 440
BslFI GGGAC 2 cut(s) 98, 351
BslI CCNNNNNNNGG 2 cut(s) 375, 490
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 98, 351
BsnI GGCC 3 cut(s) 151, 380, 473
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 2 cut(s) 322, 417
BspACI CCGC 5 cut(s) 110, 312, 408, 410, 474
BspANI GGCC 3 cut(s) 151, 380, 473
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 5 cut(s) 114, 295, 316, 399, 444
BspPI GGATC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 207, 318, 408
BssMI GATC 2 cut(s) 322, 417
BssT1I CCWWGG 2 cut(s) 207, 318
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 179, 329, 425
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 217, 265
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 2 cut(s) 325, 420
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 322, 417
BstMCI CGRYCG 1 cut(s) 414
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 203, 235
BstSCI CCNGG 1 cut(s) 289
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 3 cut(s) 151, 380, 473
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 217, 265
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 184, 325, 453
Cfr13I GGNCC 5 cut(s) 112, 149, 293, 378, 425
Cfr42I CCGCGG 1 cut(s) 411
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 253
CviAII CATG 3 cut(s) 105, 200, 232
CviQI GTAC 1 cut(s) 253
DpnI GATC 2 cut(s) 324, 419
DpnII GATC 2 cut(s) 322, 417
Eco130I CCWWGG 2 cut(s) 207, 318
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 3 cut(s) 112, 293, 425
EcoO109I RGGNCCY 2 cut(s) 293, 378
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 207, 318
ErhI CCWWGG 2 cut(s) 207, 318
FaeI CATG 3 cut(s) 108, 203, 235
FaiI YATR 6 cut(s) 106, 174, 201, 219, 233, 362
FaqI GGGAC 2 cut(s) 98, 351
FatI CATG 3 cut(s) 104, 199, 231
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 24, 474
FokI GGATG 2 cut(s) 224, 272
Fsp4HI GCNGC 2 cut(s) 24, 474
FspBI CTAG 1 cut(s) 450
GluI GCNGC 2 cut(s) 24, 474
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 3 cut(s) 151, 380, 473
HapII CCGG 2 cut(s) 395, 440
HgaI GACGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 108, 203, 235
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 125, 188
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 2 cut(s) 395, 440
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 67, 124, 447, 527
Hpy188III TCNNGA 2 cut(s) 18, 415
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 353, 425
HpyAV CCTTC 3 cut(s) 126, 307, 411
HpyCH4III ACNGT 3 cut(s) 179, 329, 425
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 182, 199, 228
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 3 cut(s) 108, 203, 235
KspAI GTTAAC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 411
Kzo9I GATC 2 cut(s) 322, 417
LmnI GCTCC 2 cut(s) 442, 448
LpnPI CCDG 9 cut(s) 85, 276, 303, 361, 382, 408, 441, 453, 462
Lsp1109I GCAGC 1 cut(s) 10
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 324, 419
MboI GATC 2 cut(s) 322, 417
MboII GAAGA 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 1 cut(s) 391
MseI TTAA 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 410, 476
MspI CCGG 2 cut(s) 395, 440
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 410
NdeII GATC 2 cut(s) 322, 417
NlaIII CATG 3 cut(s) 108, 203, 235
NlaIV GGNNCC 5 cut(s) 114, 295, 316, 399, 444
NmuCI GTSAC 1 cut(s) 202
NspI RCATGY 2 cut(s) 203, 235
PciI ACATGT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 354, 429
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 25, 475
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 293
PscI ACATGT 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 5 cut(s) 114, 295, 316, 399, 444
PspPI GGNCC 5 cut(s) 112, 149, 293, 378, 425
PspPPI RGGWCCY 1 cut(s) 293
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SacII CCGCGG 1 cut(s) 411
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 24, 474
Sau3AI GATC 2 cut(s) 322, 417
Sau96I GGNCC 5 cut(s) 112, 149, 293, 378, 425
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 282
SetI ASST 6 cut(s) 25, 62, 165, 348, 403, 517
Sfr303I CCGCGG 1 cut(s) 411
SgrBI CCGCGG 1 cut(s) 411
SinI GGWCC 3 cut(s) 112, 293, 425
SsiI CCGC 5 cut(s) 110, 312, 408, 410, 474
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 207, 318
TaaI ACNGT 3 cut(s) 179, 329, 425
TaiI ACGT 1 cut(s) 165
TaqI TCGA 4 cut(s) 17, 282, 414, 420
TaqII GACCGA 1 cut(s) 181
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 184, 332, 460
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 295
TspRI CASTG 3 cut(s) 184, 332, 460
Tth111I GACNNNGTC 1 cut(s) 191
VpaK11BI GGWCC 3 cut(s) 112, 293, 425
XceI RCATGY 2 cut(s) 203, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.