pycom08g04610

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012899
Physical Location & Seq
Reverse (-)
3482564 .. 3483218
655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04610.1

Sequence Viewer

Length: 543 bp
ATGGCTGGCTTTTCATCCTCAAAAGCTCTGTCATACTCCTCTCTTCTCGTCGTCTTCCTCCTCTTCGGCTTCTCGGAAGCCAGAGAGATCACCGTCGGTGGCAAGAATGGCTCATGGGCAGTCCCCTCCTCCGAATCGCAATCCCTCAACAAATGGGCCGAAAGCACCCGCTTTCGCGTCGGCGACACTCTTGTGTGGAAGTACGACAGCGCCAAAGACTCAGTCTTGCGAGTGACGAAAGAAGACTACTCAAACTGCAATGCGTCAAACCCAATTGAGCAGCTCAAGGACGGCGAAACAAAGCTCCACCTTGACCAGCCAGGGCCTTACTACTTCATCAGCGGAACCAAGGGACACTGCGAGAAGGGGCAGAAACTGGTGGTGGTGGTTATGACTCCAAGGAAGCACCTCGGTATTTCTCCCGCTCCTTCTCCGGCAGGGGAGGTCGACGGTCCTGCTATTGCTCCGACAAGCGGCGCTACAAGCTTGAAGGGTGGTGTTCTGACTGTGGTGGCATTGGGAGTTTTTTGTCTGTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

181

Amino Acids

19.26

Weight (kDa)

8.4

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 39 - 124 1.1e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 425
AccI GTMKAC 1 cut(s) 447
AccII CGCG 1 cut(s) 177
AciI CCGC 4 cut(s) 169, 342, 423, 474
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 1 cut(s) 319
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 4 cut(s) 26, 283, 304, 486
AluI AGCT 4 cut(s) 26, 283, 304, 486
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 2 cut(s) 156, 323
ApeKI GCWGC 1 cut(s) 280
ArsI GACNNNNNNTTYG 4 cut(s) 14, 46, 207, 239
AspLEI GCGC 2 cut(s) 212, 479
AspS9I GGNCC 3 cut(s) 156, 323, 452
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 452
BbsI GAAGAC 2 cut(s) 46, 249
BbvI GCAGC 1 cut(s) 292
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 1 cut(s) 321
BfoI RGCGCY 2 cut(s) 213, 480
BisI GCNGC 2 cut(s) 281, 475
BlsI GCNGC 2 cut(s) 282, 476
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 3 cut(s) 156, 323, 452
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 46, 249
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 4 cut(s) 320, 348, 398, 409
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 320, 348, 398, 409
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 3 cut(s) 28, 50, 118
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 158, 325
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 107, 366
BslI CCNNNNNNNGG 1 cut(s) 473
BsmFI GGGAC 2 cut(s) 107, 366
BsnI GGCC 2 cut(s) 158, 325
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 4 cut(s) 169, 342, 423, 474
BspANI GGCC 2 cut(s) 158, 325
BspCNI CTCAG 1 cut(s) 233
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 4 cut(s) 320, 348, 398, 409
BssMI GATC 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 348, 398
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 94, 452, 508
Bst6I CTCTTC 2 cut(s) 48, 68
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 2 cut(s) 213, 480
BstHHI GCGC 2 cut(s) 212, 479
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 108, 483
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 2 cut(s) 46, 249
BsuRI GGCC 2 cut(s) 158, 325
BtsCI GGATG 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 2 cut(s) 212, 479
Cfr13I GGNCC 3 cut(s) 156, 323, 452
CseI GACGC 2 cut(s) 166, 252
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 114
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 220
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 48, 68
EarI CTCTTC 2 cut(s) 48, 68
Eco130I CCWWGG 2 cut(s) 348, 398
Eco47I GGWCC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 348, 398
ErhI CCWWGG 2 cut(s) 348, 398
FaeI CATG 1 cut(s) 117
FaiI YATR 3 cut(s) 34, 115, 392
FaqI GGGAC 2 cut(s) 107, 366
FatI CATG 1 cut(s) 113
FauI CCCGC 2 cut(s) 176, 430
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 2 cut(s) 281, 475
Fsp4HI GCNGC 2 cut(s) 281, 475
GlaI GCGC 2 cut(s) 211, 478
GluI GCNGC 2 cut(s) 281, 475
HaeII RGCGCY 2 cut(s) 213, 480
HaeIII GGCC 2 cut(s) 158, 325
HapII CCGG 1 cut(s) 434
HgaI GACGC 2 cut(s) 166, 252
HhaI GCGC 2 cut(s) 212, 479
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 2 cut(s) 210, 477
HinP1I GCGC 2 cut(s) 210, 477
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 134, 218, 394
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 76, 133, 468, 504
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 4 cut(s) 53, 98, 182, 452
HpyAV CCTTC 3 cut(s) 358, 438, 484
HpyCH4III ACNGT 3 cut(s) 94, 452, 508
HpyCH4V TGCA 1 cut(s) 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 483
HpyF3I CTNAG 1 cut(s) 220
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 2 cut(s) 210, 477
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 309, 430, 469
LpnPI CCDG 8 cut(s) 94, 306, 329, 333, 362, 423, 447, 468
Lsp1109I GCAGC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 89
MbiI CCGCTC 1 cut(s) 425
MboI GATC 1 cut(s) 87
MboII GAAGA 4 cut(s) 35, 46, 55, 254
MfeI CAATTG 1 cut(s) 273
MluCI AATT 1 cut(s) 273
MlyI GAGTC 2 cut(s) 212, 388
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 9 cut(s) 28, 49, 68, 71, 136, 139, 155, 419, 436
MslI CAYNNNNRTG 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 108, 483
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 191
PfeI GAWTC 1 cut(s) 134
PflFI GACNNNGTC 1 cut(s) 221
PkrI GCNGC 2 cut(s) 282, 476
PleI GAGTC 2 cut(s) 212, 388
PpsI GAGTC 2 cut(s) 212, 388
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 3 cut(s) 156, 323, 452
PstNI CAGNNNCTG 1 cut(s) 376
PsyI GACNNNGTC 1 cut(s) 221
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 191
SalI GTCGAC 1 cut(s) 446
SatI GCNGC 2 cut(s) 281, 475
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 3 cut(s) 156, 323, 452
SchI GAGTC 2 cut(s) 212, 388
ScrFI CCNGG 1 cut(s) 321
SetI ASST 7 cut(s) 28, 285, 306, 312, 411, 447, 488
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 273
SsiI CCGC 4 cut(s) 169, 342, 423, 474
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 348, 398
TaaI ACNGT 3 cut(s) 94, 452, 508
TaqI TCGA 1 cut(s) 447
TasI AATT 1 cut(s) 273
TauI GCSGC 1 cut(s) 477
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 362
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 325
TspRI CASTG 1 cut(s) 362
Tth111I GACNNNGTC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.