Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012899

Physical Location & Seq

Genomic Coordinates Reverse (-)

8647018 .. 8647817

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTCAGAGAACTCTTGTTGCAACATTTTTTCTAATCTTCTTCTTGTTGACTAATCTCGTCTGTAGCAAAGAGATTATTGTCGGAGGCAAAACCAGCTCCTGGAAGATCCCTTCTTCGCCTTCTGAGTCCCTAAACAAATGGGCTGAGAGTTTACGGTTTCGCGTTGGCGACACTCTCGTGTGGAAGTACGATGAGGAAAAGGACTCGGTTTTGCAAGTGACGAAAGATGCATACATTAACTGCAACACCACAAACCCAGCAGCTAACTACAGCAATGGAGATACTAAAGTGAAGCTAGAGAGATCTGGTCCTTACTTCTTCATCAGCGGCTCTAAAAGCAACTGCGTTGAAGGTGAGAAGCTTCATATTGTTGTCATGTCCTCTCGTGGTGGCCACACCGGTGGTTTTTTTACTGGTTCTTCTCCTTCTCCTGCACCATCTCCAGCTTTGTTAGGAGCTCCCACTGTGGCTCCAGCCAGTGGTGGCTCTGCTTCTTCTTTAACTCGCCAAGTTGGGGTTTTGGGATTTGTTGGATTATTAGCGATTGTTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

186

Amino Acids

19.77

Weight (kDa)

9.03

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 119	6.6e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25060 AT4G31840 AT5G25090
fragaria_vesca	FvH4_2g41150
malus_domestica	MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica	Prupe.1G394200_v2.0.a1
pyrus_communis	pycom08g04610 pycom15g03810
rosa_chinensis	RchiOBHm_Chr6g0299381
rosa_laevigata	RLG00000011437
rosa_roxburghii	Rroxscaffold_7G00168740
rosa_rugosa	Rorug06G0287700
rosa_samantha	Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana	Rw6G034960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	102, 482
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	394
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	102, 482, 517
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	101
AleI	CACNNNNGTG	2 cut(s)	179, 402
AluBI	AGCT	6 cut(s)	99, 266, 298, 364, 449, 461
AluI	AGCT	6 cut(s)	99, 266, 298, 364, 449, 461
Alw21I	GWGCWC	1 cut(s)	463
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	1 cut(s)	102
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	263
AsiGI	ACCGGT	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BalI	TGGCCA	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	463
BauI	CACGAG	2 cut(s)	179, 387
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	448
BcgI	CGANNNNNNTGC	1 cut(s)	535
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	64, 271
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	2 cut(s)	264, 331
BlsI	GCNGC	2 cut(s)	265, 332
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	429, 459
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 482, 517
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	2 cut(s)	421, 480
Bse3DI	GCAATG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	102, 482, 517
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	3 cut(s)	20, 117, 138
BseNI	ACTGG	2 cut(s)	421, 480
BseXI	GCAGC	1 cut(s)	275
BseYI	CCCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	396
BshTI	ACCGGT	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	102, 482, 517
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	2 cut(s)	108, 305
BspACI	CCGC	1 cut(s)	330
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	3 cut(s)	19, 118, 139
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	421, 480
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	2 cut(s)	108, 305
BssSI	CACGAG	2 cut(s)	179, 387
Bst2BI	CACGAG	2 cut(s)	179, 387
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	159, 469
BstDEI	CTNAG	3 cut(s)	6, 126, 147
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	2 cut(s)	111, 308
BstMBI	GATC	2 cut(s)	108, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 339
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	64, 271
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	108, 305
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	2 cut(s)	108, 305
BsuRI	GGCC	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	465, 487
CaiI	CAGNNNCTG	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	190
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	6, 126, 147
DpnI	GATC	2 cut(s)	110, 307
DpnII	GATC	2 cut(s)	108, 305
EaeI	YGGCCR	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	461
Eco24I	GRGCYC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	463
FaeI	CATG	1 cut(s)	382
FaiI	YATR	3 cut(s)	235, 369, 380
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	264, 331
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	2 cut(s)	264, 331
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	264, 331
GsaI	CCCAGC	1 cut(s)	263
GsuI	CTGGAG	2 cut(s)	429, 459
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	128, 206
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	51, 155
Hpy188I	TCNGA	3 cut(s)	9, 86, 127
Hpy8I	GTNNAC	2 cut(s)	51, 155
HpyAV	CCTTC	4 cut(s)	123, 132, 347, 438
HpyCH4III	ACNGT	2 cut(s)	159, 469
HpyCH4V	TGCA	5 cut(s)	23, 217, 233, 246, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 339
HpyF3I	CTNAG	3 cut(s)	6, 126, 147
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	108, 305
LmnI	GCTCC	4 cut(s)	104, 458, 466, 478
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	110, 307
MboI	GATC	2 cut(s)	108, 305
MboII	GAAGA	7 cut(s)	31, 34, 108, 118, 313, 414, 489
MflI	RGATCY	2 cut(s)	108, 305
MhlI	GDGCHC	1 cut(s)	463
MlsI	TGGCCA	1 cut(s)	396
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	137, 200
MmeI	TCCRAC	2 cut(s)	64, 514
MnlI	CCTC	3 cut(s)	80, 190, 394
Mox20I	TGGCCA	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	2 cut(s)	240, 503
MslI	CAYNNNNRTG	2 cut(s)	179, 402
Msp20I	TGGCCA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	96, 339
NdeII	GATC	2 cut(s)	108, 305
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	235
OliI	CACNNNNGTG	2 cut(s)	179, 402
PflMI	CCANNNNNTGG	2 cut(s)	102, 482
PfoI	TCCNGGA	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	265, 332
PleI	GAGTC	2 cut(s)	136, 200
PpsI	GAGTC	2 cut(s)	136, 200
Psp124BI	GAGCTC	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	108, 305
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	179, 402
SacI	GAGCTC	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	240, 503
SatI	GCNGC	2 cut(s)	264, 331
Sau3AI	GATC	2 cut(s)	108, 305
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	137, 200
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	7 cut(s)	101, 268, 300, 358, 366, 451, 463
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	64, 271
SgrAI	CRCCGGYG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	179, 402
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	159, 469
TauI	GCSGC	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	240, 503
Tru9I	TTAA	2 cut(s)	240, 503
TscAI	CASTG	2 cut(s)	472, 487
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	313, 356
TspRI	CASTG	2 cut(s)	472, 487
Van91I	CCANNNNNTGG	2 cut(s)	102, 482
VpaK11BI	GGWCC	1 cut(s)	311
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.