AT4G31840

early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012899
Physical Location & Seq
Forward (+)
15401640 .. 15402629
990 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31840.1

Sequence Viewer

Length: 534 bp
ATGGCTTCTTCTTCTCTTTTGGTCACCATCTTCCTCTGCATCTCTGTCTTCTTCTTTTCGTCCGTGAATGCAAATGAGGTTACCGTCGGTGGAAAATCCGGTGACTGGAAGATCCCTCCTTCCTCTTCTTTCTCCTTTAACGAATGGGCTCAAAAGGCTCGCTTCAAAGTCGGCGACTTTATCGTATTCAAGTACGAAGCCGGTAAAGACTCGGTTTTGCAAGTGACACGAGAAGCATACGAGAAATGCAACACCACTAGCCCTAAAGCCAGCTACACCGACGGGAACACAAAGGTGAAGCTTGACCAAGCTGGTCCGGTCTACTTCGTCAGTGGAACAGAGGGTCATTGTCAAAAGGGTCAGAAGCTACGCCTAGTCGTCATCACTCCTCGTAACTCTGCTTTCTCTCCAGGTCCTTCGCCATCTGAGTTCGACGGTCCAGCCGTAGCTCCTACTAGTGGTGCCGCTAAGCTCGCCGGCGGATTTAGTGTCGTATTTGGGCTTGTTCTTGGATTATGGGCCTTCTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

177

Amino Acids

18.96

Weight (kDa)

8.99

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 121 1.3e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 321
AciI CCGC 2 cut(s) 465, 480
AclWI GGATC 1 cut(s) 106
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 105, 458
AgsI TTSAA 2 cut(s) 166, 190
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 6 cut(s) 273, 301, 311, 367, 449, 472
AluI AGCT 6 cut(s) 273, 301, 311, 367, 449, 472
AlwI GGATC 1 cut(s) 106
AoxI GGCC 1 cut(s) 519
AspS9I GGNCC 4 cut(s) 314, 413, 437, 519
AsuHPI GGTGA 3 cut(s) 16, 113, 307
AvaII GGWCC 3 cut(s) 314, 413, 437
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 151
BauI CACGAG 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 40
BccI CCATC 2 cut(s) 35, 430
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 258, 374, 456
BisI GCNGC 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 3 cut(s) 314, 413, 437
BmgT120I GGNCC 4 cut(s) 314, 413, 437, 519
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 393
Bpu1102I GCTNAGC 1 cut(s) 468
BsaWI WCCGGW 2 cut(s) 98, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 458
Bse118I RCCGGY 2 cut(s) 200, 476
Bse1I ACTGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 411
BseLI CCNNNNNNNGG 2 cut(s) 105, 458
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 461
BsiSI CCGG 4 cut(s) 99, 201, 317, 477
BslI CCNNNNNNNGG 2 cut(s) 105, 458
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 111
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 2 cut(s) 465, 480
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 461
BsrFI RCCGGY 2 cut(s) 200, 476
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 2 cut(s) 200, 476
BssMI GATC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 85, 437
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 160, 271, 474, 478
BstDEI CTNAG 2 cut(s) 426, 468
BstEII GGTNACC 2 cut(s) 22, 79
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 155, 473
BstNI CCWGG 1 cut(s) 411
BstPI GGTNACC 2 cut(s) 22, 79
BstSCI CCNGG 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 521
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 4 cut(s) 160, 271, 474, 478
Cfr10I RCCGGY 2 cut(s) 200, 476
Cfr13I GGNCC 4 cut(s) 314, 413, 437, 519
Csp6I GTAC 1 cut(s) 193
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 426, 468
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 3 cut(s) 314, 413, 437
Eco91I GGTNACC 2 cut(s) 22, 79
EcoO109I RGGNCCY 1 cut(s) 413
EcoO65I GGTNACC 2 cut(s) 22, 79
EcoRII CCWGG 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 151
FaiI YATR 2 cut(s) 238, 517
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 465
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 3 cut(s) 258, 374, 456
GluI GCNGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 521
HapII CCGG 4 cut(s) 99, 201, 317, 477
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 1 cut(s) 209
HpaII CCGG 4 cut(s) 99, 201, 317, 477
HphI GGTGA 3 cut(s) 16, 113, 307
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 363, 427
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 3 cut(s) 89, 284, 437
HpyAV CCTTC 3 cut(s) 129, 426, 532
HpyCH4III ACNGT 2 cut(s) 85, 437
HpyCH4V TGCA 4 cut(s) 39, 71, 220, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 473
HpyF3I CTNAG 2 cut(s) 426, 468
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 454
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 258, 374, 456
MaeIII GTNAC 5 cut(s) 22, 79, 101, 223, 392
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 7 cut(s) 3, 22, 40, 43, 117, 121, 517
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 44, 70, 126, 133, 334, 399
MreI CGCCGGCG 1 cut(s) 476
MroNI GCCGGC 1 cut(s) 476
MseI TTAA 2 cut(s) 138, 532
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 4 cut(s) 99, 201, 317, 477
MspR9I CCNGG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 2 cut(s) 155, 473
NaeI GCCGGC 1 cut(s) 478
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 476
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 3 cut(s) 22, 101, 223
OliI CACNNNNGTG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 478
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 409
PspEI GGTNACC 2 cut(s) 22, 79
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 4 cut(s) 314, 413, 437, 519
PspPPI RGGWCCY 1 cut(s) 413
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 138, 532
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 4 cut(s) 314, 413, 437, 519
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 151
SetI ASST 9 cut(s) 81, 275, 297, 303, 313, 369, 415, 451, 474
SfaNI GCATC 1 cut(s) 48
SgrAI CRCCGGYG 1 cut(s) 476
SinI GGWCC 3 cut(s) 314, 413, 437
SmiMI CAYNNNNRTG 1 cut(s) 293
SpeI ACTAGT 1 cut(s) 455
SsiI CCGC 2 cut(s) 465, 480
SspMI CTAG 3 cut(s) 258, 374, 456
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 85, 437
TaqI TCGA 1 cut(s) 432
TauI GCSGC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 138, 532
Tru9I TTAA 2 cut(s) 138, 532
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 3 cut(s) 22, 101, 223
Tsp45I GTSAC 3 cut(s) 22, 101, 223
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 314, 413, 437
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 3 cut(s) 258, 374, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.