Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012899

Physical Location & Seq

Genomic Coordinates Forward (+)

43763753 .. 43764382

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0287700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCAGAGCCACACGAGAGTCTCGTCAAGCTCATGGTTGTCGGCAACAGAGACGTCGGAAAGTCTTCTCTGATGAGAAAATTCTCTCCCTGTGGTTCCCACACCGAACTCCTGAAGCCTTATGGGATAGAATACACCGCAAGAACCATTCAACTAGACAATGAACTGGTCAAGTTGCAAATCTGGAACGCAGCTGTTCAGGAACGGTTTCAAAAGATTCCGAAAACCTTTTATCAAGGGGCCAAGGGGCTTCTATTGGTGTATGATGTCACTAATCAGTTGTCTTTCACCGAAATCAGTAAATGGCTTCGCAACATCAAAGAAGATCCTGACAATAATATCAAGAAGATACTGGTGGGGAACAAGGCTGATAAGGATGAGAGCGAAAGGGCTGTGAGCACTGCTAGAGGTCAAGCTCTTGCTAAAGAGTACGACATTGAGTTCTTTGAAACGAGTGCGGAGACGAACATGAATGTGGAGGAGGTCTTCTTTTCAATAGCCCGGGATATCATGCTGGAATCTAAAGCTTCCCGGGTCGCTCATGAGCCTCAGACATTTGGGATTAGCCAGCTAAACAAAGGAGAAACTGCATTGGGGAATAAATTGCAGAGAAGCCAGACTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

209

Amino Acids

23.63

Weight (kDa)

6.86

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 167	5.8e-08	ADP-ribosylation factor family
Ras	PF00071	10 - 171	1.6e-46	Ras family
Roc	PF08477	10 - 124	1.1e-21	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25060 AT4G31840 AT5G25090
fragaria_vesca	FvH4_2g41150
malus_domestica	MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica	Prupe.1G394200_v2.0.a1
pyrus_communis	pycom08g04610 pycom15g03810
rosa_chinensis	RchiOBHm_Chr6g0299381
rosa_laevigata	RLG00000011437
rosa_roxburghii	Rroxscaffold_7G00168740
rosa_rugosa	Rorug06G0287700
rosa_samantha	Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana	Rw6G034960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AciI	CCGC	2 cut(s)	138, 458
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	152, 212, 449, 495
AluBI	AGCT	5 cut(s)	31, 194, 416, 527, 571
AluI	AGCT	5 cut(s)	31, 194, 416, 527, 571
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	3 cut(s)	26, 45, 455
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	501, 531
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	64, 207
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	4 cut(s)	502, 503, 532, 533
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	2 cut(s)	501, 531
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	2 cut(s)	57, 478
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	203
BcnI	CCSGG	4 cut(s)	502, 503, 532, 533
BcoDI	GTCTC	3 cut(s)	26, 45, 455
BfaI	CTAG	2 cut(s)	155, 405
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	4 cut(s)	502, 503, 532, 533
BmeT110I	CYCGRG	2 cut(s)	501, 531
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	2 cut(s)	97, 241
BmrFI	CCNGG	4 cut(s)	502, 503, 532, 533
BpiI	GAAGAC	2 cut(s)	57, 478
BpuMI	CCSGG	4 cut(s)	502, 503, 532, 533
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	243, 501, 531
Bse1I	ACTGG	2 cut(s)	171, 357
BseDI	CCNNGG	3 cut(s)	243, 501, 531
BseGI	GGATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	2 cut(s)	171, 357
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	2 cut(s)	501, 531
BsiSI	CCGG	2 cut(s)	502, 532
BsmAI	GTCTC	3 cut(s)	26, 45, 455
BsmBI	CGTCTC	2 cut(s)	45, 455
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	2 cut(s)	501, 531
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	138, 458
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	1 cut(s)	562
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	97, 241
BspPI	GGATC	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	171, 357
BssECI	CCNNGG	3 cut(s)	243, 501, 531
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	3 cut(s)	26, 45, 455
BstMBI	GATC	1 cut(s)	325
BstSCI	CCNGG	4 cut(s)	500, 501, 530, 531
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	2 cut(s)	57, 478
BstX2I	RGATCY	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	569
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	240
Cfr9I	CCCGGG	2 cut(s)	501, 531
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	34, 469, 511, 542
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	501, 531
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	2 cut(s)	45, 455
FaeI	CATG	4 cut(s)	37, 472, 514, 545
FaiI	YATR	6 cut(s)	35, 123, 264, 470, 512, 543
FalI	AAGNNNNNCTT	1 cut(s)	604
FatI	CATG	4 cut(s)	33, 468, 510, 541
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	155, 405
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	2 cut(s)	502, 532
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	37, 472, 514, 545
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	3 cut(s)	19, 217, 518
HpaII	CCGG	2 cut(s)	502, 532
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	59, 72, 222, 552
Hpy188III	TCNNGA	6 cut(s)	112, 184, 200, 329, 343, 542
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	178, 590, 607
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	37, 472, 514, 545
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	155, 405
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	57, 335, 358, 478
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	80, 602
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	401, 472, 475, 558
MroXI	GAANNNNTTC	2 cut(s)	64, 207
MseI	TTAA	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	2 cut(s)	502, 532
MspR9I	CCNGG	4 cut(s)	502, 503, 532, 533
NciI	CCSGG	4 cut(s)	502, 503, 532, 533
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	37, 472, 514, 545
NlaIV	GGNNCC	2 cut(s)	97, 241
NmuCI	GTSAC	1 cut(s)	268
PagI	TCATGA	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	2 cut(s)	64, 207
PfeI	GAWTC	2 cut(s)	217, 518
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	97, 241
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	4 cut(s)	502, 503, 532, 533
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	33, 57, 196, 230, 412, 418, 486, 529, 573
SmaI	CCCGGG	2 cut(s)	503, 533
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	80, 602
SsiI	CCGC	2 cut(s)	138, 458
SspMI	CTAG	2 cut(s)	155, 405
StyD4I	CCNGG	4 cut(s)	500, 501, 530, 531
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	57
TasI	AATT	2 cut(s)	80, 602
TfiI	GAWTC	2 cut(s)	217, 518
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	177, 485
TspMI	CCCGGG	2 cut(s)	501, 531
TspRI	CASTG	1 cut(s)	406
XapI	RAATTY	1 cut(s)	80
XmaI	CCCGGG	2 cut(s)	501, 531
XmnI	GAANNNNTTC	2 cut(s)	64, 207
XspI	CTAG	2 cut(s)	155, 405
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.