FvH4_2g41150

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012899
Physical Location & Seq
Forward (+)
29172586 .. 29173226
641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41150.t1

Sequence Viewer

Length: 555 bp
ATGGCAATGGCATCAAGAGCTGCTTCTTTGCTAGCTGTCGTGTTTCTGGTGTTGTTGAGCTTCTCAGAAGCCAGAGAGTATTTGGTGGGAGGCAAATCAGACGCATGGGCAGTCCCTTCTTCGGAATCCGAATCTCTCAACAAATGGGCTGAAAGCAAACGGTTCAGGACCGGCGACGTTCTTGTGTGGAAGTATGACGGTGCAAAAGACTCGGTGTTGTATGTGAGCAAGGAAGACTATGTGAACTGCAACACGTCAAACCCAATGAAGCAGTACAAGGATGGCGAGACCAAGATTGTGCTGGACAAATCAGGACCCTTCTACTTCATCAGCGGAACCAAGGACCACTGTGTAAAGGGACAGAAGCTCGTTGTTGTCGTTATGTCCCACAGAACCAGTCCCTCCTCCGCCATCTCTCCGGCACCTTCTCCCGCCTTCGATGTCACAGACGGTCCCGCCGTTGCTCCAGCTCCGACTAGCAGTGCTTCCCCTTTCAAGGCCGGTCTCCTCGTTGTTGTGGCCCTCATGGGGTTTTCGGCAGCTCTGCTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

185

Amino Acids

19.63

Weight (kDa)

8.47

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 36 - 121 1.3e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AciI CCGC 4 cut(s) 333, 408, 432, 456
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 121, 496, 528
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 496
AjiI CACGTC 1 cut(s) 255
AluBI AGCT 6 cut(s) 20, 35, 60, 367, 470, 542
AluI AGCT 6 cut(s) 20, 35, 60, 367, 470, 542
Alw26I GTCTC 2 cut(s) 281, 509
AoxI GGCC 2 cut(s) 498, 519
ApeKI GCWGC 2 cut(s) 20, 539
AspS9I GGNCC 5 cut(s) 168, 314, 343, 452, 520
AsuNHI GCTAGC 1 cut(s) 31
AvaII GGWCC 4 cut(s) 168, 314, 343, 452
BanI GGYRCC 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 2 cut(s) 7, 551
BccI CCATC 2 cut(s) 275, 419
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 192, 226
BcoDI GTCTC 2 cut(s) 281, 509
BfaI CTAG 3 cut(s) 32, 477, 553
BisI GCNGC 2 cut(s) 21, 540
BlsI GCNGC 2 cut(s) 22, 541
Bme18I GGWCC 4 cut(s) 168, 314, 343, 452
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 5 cut(s) 168, 314, 343, 452, 520
BmiI GGNNCC 4 cut(s) 316, 337, 423, 454
BmsI GCATC 1 cut(s) 20
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 450
BsaI GGTCTC 2 cut(s) 281, 509
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 496, 528
Bse118I RCCGGY 2 cut(s) 170, 500
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 121, 496, 528
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 396
BseRI GAGGAG 2 cut(s) 394, 497
BseXI GCAGC 2 cut(s) 7, 551
BshFI GGCC 2 cut(s) 500, 521
BshNI GGYRCC 1 cut(s) 421
BsiSI CCGG 3 cut(s) 171, 419, 501
BslFI GGGAC 5 cut(s) 98, 370, 372, 384, 438
BslI CCNNNNNNNGG 3 cut(s) 121, 496, 528
BsmAI GTCTC 2 cut(s) 281, 509
BsmFI GGGAC 5 cut(s) 98, 370, 372, 384, 438
BsnI GGCC 2 cut(s) 500, 521
Bso31I GGTCTC 2 cut(s) 281, 509
BspACI CCGC 4 cut(s) 333, 408, 432, 456
BspANI GGCC 2 cut(s) 500, 521
BspCNI CTCAG 1 cut(s) 77
BspLI GGNNCC 4 cut(s) 316, 337, 423, 454
BspOI GCTAGC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 421
BspTNI GGTCTC 2 cut(s) 281, 509
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 170, 500
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 2 cut(s) 170, 500
BssECI CCNNGG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 4 cut(s) 162, 200, 350, 452
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 281, 509
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 7, 551
BstV2I GAAGAC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 500, 521
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 346, 487
Cac8I GCNNGC 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 170, 500
Cfr13I GGNCC 5 cut(s) 168, 314, 343, 452, 520
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 105, 526
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 64
EciI GGCGGA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 339
Eco31I GGTCTC 2 cut(s) 281, 509
Eco47I GGWCC 4 cut(s) 168, 314, 343, 452
EcoO109I RGGNCCY 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 2 cut(s) 108, 529
FaiI YATR 6 cut(s) 106, 195, 222, 240, 383, 527
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FaqI GGGAC 5 cut(s) 98, 370, 372, 384, 438
FatI CATG 2 cut(s) 104, 525
FauI CCCGC 2 cut(s) 439, 463
Fnu4HI GCNGC 2 cut(s) 21, 540
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 21, 540
FspBI CTAG 3 cut(s) 32, 477, 553
GluI GCNGC 2 cut(s) 21, 540
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 500, 521
HapII CCGG 3 cut(s) 171, 419, 501
HgaI GACGC 1 cut(s) 110
Hin1II CATG 2 cut(s) 108, 529
HinfI GANTC 3 cut(s) 125, 131, 209
HpaII CCGG 3 cut(s) 171, 419, 501
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 67, 100, 124, 130, 474
Hpy188III TCNNGA 3 cut(s) 15, 166, 312
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 126, 328, 435, 445
HpyCH4III ACNGT 4 cut(s) 162, 200, 350, 452
HpyCH4IV ACGT 2 cut(s) 177, 254
HpyCH4V TGCA 2 cut(s) 203, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 2 cut(s) 177, 254
Hsp92II CATG 2 cut(s) 108, 529
LmnI GCTCC 2 cut(s) 469, 475
Lsp1109I GCAGC 2 cut(s) 7, 551
LweI GCATC 1 cut(s) 20
MaeI CTAG 3 cut(s) 32, 477, 553
MaeII ACGT 2 cut(s) 177, 254
MaeIII GTNAC 1 cut(s) 442
MboII GAAGA 2 cut(s) 111, 245
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 5 cut(s) 83, 412, 415, 518, 533
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 3 cut(s) 171, 419, 501
MwoI GCNNNNNNNGC 1 cut(s) 17
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 2 cut(s) 108, 529
NlaIV GGNNCC 4 cut(s) 316, 337, 423, 454
NmuCI GTSAC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 375, 456
PfeI GAWTC 2 cut(s) 125, 131
PkrI GCNGC 2 cut(s) 22, 541
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 314
Psp5II RGGWCCY 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 316, 337, 423, 454
PspPI GGNCC 5 cut(s) 168, 314, 343, 452, 520
PspPPI RGGWCCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SatI GCNGC 2 cut(s) 21, 540
Sau96I GGNCC 5 cut(s) 168, 314, 343, 452, 520
SchI GAGTC 1 cut(s) 203
SetI ASST 9 cut(s) 22, 37, 62, 180, 257, 369, 427, 472, 544
SfaNI GCATC 1 cut(s) 20
SinI GGWCC 4 cut(s) 168, 314, 343, 452
SsiI CCGC 4 cut(s) 333, 408, 432, 456
SspMI CTAG 3 cut(s) 32, 477, 553
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 162, 200, 350, 452
TaiI ACGT 2 cut(s) 180, 257
TaqI TCGA 1 cut(s) 438
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 2 cut(s) 125, 131
TscAI CASTG 2 cut(s) 353, 487
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 20, 539
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 281, 316
TspRI CASTG 2 cut(s) 353, 487
VpaK11BI GGWCC 4 cut(s) 168, 314, 343, 452
XcmI CCANNNNNNNNNTGG 2 cut(s) 79, 298
XspI CTAG 3 cut(s) 32, 477, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.