AT2G25720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017160
Physical Location & Seq
Reverse (-)
10955430 .. 10956090
661 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25720.1

Sequence Viewer

Length: 354 bp
ATGTCAGACCCTTACGAGAGAGTGAATGGTGGAAGATTGGCGTTCAAAGGAGGAGATCTAGCGACAAGGAAATCGATCGAAAAGAAGAAGAAGAAGAAGCAGAAGAAGAACAAAGAAAAGCTCGACGGTGTTGAGGATGGAGCGAAGACAGCTCCTGACGGTTCACCCCCTCCCGCCGCTGCCGCTGGAGATGAAGATATATACTCAATTGATGCGGCGAAGAAGAAGAAGTACGATGACCTATTTCCTGTGGAGGCGAAGAAGTTCGGTTACATTCCGAAAGCAAATTTCGAATCCAGGGAAGATGCTCTTGACGATCGCGTCAAGAAGAAAGCTGATCGCTACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

117

Amino Acids

13.03

Weight (kDa)

9.44

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccII CGCG 1 cut(s) 321
AciI CCGC 4 cut(s) 174, 177, 183, 215
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 3 cut(s) 121, 152, 335
AluI AGCT 3 cut(s) 121, 152, 335
AlwNI CAGNNNCTG 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 156
AsuII TTCGAA 1 cut(s) 291
BarI GAAGNNNNNNTAC 4 cut(s) 215, 247, 254, 286
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 298
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 55
BisI GCNGC 4 cut(s) 177, 180, 183, 216
BlsI GCNGC 4 cut(s) 178, 181, 184, 217
Bme1390I CCNGG 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 298
BmsI GCATC 2 cut(s) 202, 295
BpiI GAAGAC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 321
Bsh1285I CGRYCG 2 cut(s) 78, 319
BshVI ATCGAT 1 cut(s) 74
BsiEI CGRYCG 2 cut(s) 78, 319
Bsp119I TTCGAA 1 cut(s) 291
Bsp143I GATC 4 cut(s) 55, 75, 316, 337
BspACI CCGC 4 cut(s) 174, 177, 183, 215
BspDI ATCGAT 1 cut(s) 74
BspFNI CGCG 1 cut(s) 321
BspT104I TTCGAA 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 4 cut(s) 55, 75, 316, 337
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 128, 161, 347
BstBI TTCGAA 1 cut(s) 291
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 4 cut(s) 58, 78, 319, 340
BstMBI GATC 4 cut(s) 55, 75, 316, 337
BstMCI CGRYCG 2 cut(s) 78, 319
BstMWI GCNNNNNNNGC 2 cut(s) 149, 182
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 74
BtsCI GGATG 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 74
CseI GACGC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 232
CviJI RGCY 3 cut(s) 121, 152, 335
CviKI_1 RGCY 3 cut(s) 121, 152, 335
CviQI GTAC 1 cut(s) 232
DpnI GATC 4 cut(s) 57, 77, 318, 339
DpnII GATC 4 cut(s) 55, 75, 316, 337
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 296
FaiI YATR 2 cut(s) 200, 202
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 177, 180, 183, 216
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 177, 180, 183, 216
FspBI CTAG 1 cut(s) 59
GluI GCNGC 4 cut(s) 177, 180, 183, 216
GsuI CTGGAG 1 cut(s) 207
HgaI GACGC 1 cut(s) 310
HinfI GANTC 1 cut(s) 293
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 7, 279
Hpy188III TCNNGA 3 cut(s) 155, 311, 325
Hpy8I GTNNAC 1 cut(s) 164
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 3 cut(s) 128, 161, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 182
Kzo9I GATC 4 cut(s) 55, 75, 316, 337
LmnI GCTCC 2 cut(s) 140, 157
LpnPI CCDG 5 cut(s) 168, 171, 261, 283, 310
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 2 cut(s) 202, 295
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 269
MalI GATC 4 cut(s) 57, 77, 318, 339
MboI GATC 4 cut(s) 55, 75, 316, 337
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 55
MluCI AATT 2 cut(s) 207, 286
MnlI CCTC 4 cut(s) 44, 127, 180, 247
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 179, 185
MspR9I CCNGG 1 cut(s) 298
MunI CAATTG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 149, 182
NdeII GATC 4 cut(s) 55, 75, 316, 337
NspV TTCGAA 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 4 cut(s) 178, 181, 184, 217
Ple19I CGATCG 2 cut(s) 78, 319
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 55
PvuI CGATCG 2 cut(s) 78, 319
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 4 cut(s) 177, 180, 183, 216
Sau3AI GATC 4 cut(s) 55, 75, 316, 337
ScrFI CCNGG 1 cut(s) 298
SetI ASST 4 cut(s) 123, 154, 243, 337
SfaNI GCATC 2 cut(s) 202, 295
SfuI TTCGAA 1 cut(s) 291
Sse9I AATT 2 cut(s) 207, 286
SsiI CCGC 4 cut(s) 174, 177, 183, 215
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 3 cut(s) 128, 161, 347
TaqI TCGA 4 cut(s) 74, 78, 123, 291
TasI AATT 2 cut(s) 207, 286
TauI GCSGC 3 cut(s) 179, 185, 218
TfiI GAWTC 1 cut(s) 293
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 207
XapI RAATTY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.