Rmu_sc0005545.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005545.1
OG0017160
Physical Location & Seq
Reverse (-)
2920 .. 3321
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005545.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atgtcggatccctacgagagagtgaaaggaggcagattgaccttcaaggacgggactttggccacgcgcagcaaagccatcgacaagaagaagaagaagaacaagaagaagaagctcctcgacaaccctaacgtcgagggcgccattgattcaggctcagccgttgatttggaaggcgacgatgcaatcgcagcagcagaagcagccgcagccggagcaggagcaggagcagaagaagaagagtcttactctatcgacgcggccaagcgcatgaagtacgatgagctcttccccgtcgaagccaagaagttcggttacgaccccaaggccattcaacaaaagtccgtcgaggctgtcctagacgaccgtgtcaagaagaaggccgaccgctactgtaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

133

Amino Acids

14.44

Weight (kDa)

8.81

Isoelectric Point (pI)

29.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 67, 260
AciI CCGC 3 cut(s) 207, 260, 388
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 261
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 2 cut(s) 46, 335
AluBI AGCT 2 cut(s) 115, 286
AluI AGCT 2 cut(s) 115, 286
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 4 cut(s) 60, 261, 327, 381
ApeKI GCWGC 5 cut(s) 69, 191, 194, 203, 209
AspLEI GCGC 3 cut(s) 69, 143, 270
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 5 cut(s) 81, 203, 206, 215, 221
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 7 cut(s) 70, 192, 195, 204, 207, 210, 261
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 7 cut(s) 71, 193, 196, 205, 208, 211, 262
BmiI GGNNCC 2 cut(s) 9, 142
BmsI GCATC 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu1102I GCTNAGC 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 5 cut(s) 81, 203, 206, 215, 221
Bsh1236I CGCG 2 cut(s) 67, 260
Bsh1285I CGRYCG 2 cut(s) 367, 388
BshFI GGCC 4 cut(s) 62, 263, 329, 383
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 367, 388
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 4 cut(s) 62, 263, 329, 383
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 3 cut(s) 207, 260, 388
BspANI GGCC 4 cut(s) 62, 263, 329, 383
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 2 cut(s) 67, 260
BspLI GGNNCC 2 cut(s) 9, 142
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 368, 395
Bst6I CTCTTC 2 cut(s) 234, 293
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 157
BstFNI CGCG 2 cut(s) 67, 260
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 69, 143, 270
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 367, 388
BstMWI GCNNNNNNNGC 5 cut(s) 191, 200, 203, 209, 215
BstUI CGCG 2 cut(s) 67, 260
BstV1I GCAGC 5 cut(s) 81, 203, 206, 215, 221
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 62, 263, 329, 383
CfoI GCGC 3 cut(s) 69, 143, 270
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 271
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 157
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 60, 261
Eam1104I CTCTTC 2 cut(s) 234, 293
EarI CTCTTC 2 cut(s) 234, 293
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 288
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 274
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 70, 192, 195, 204, 207, 210, 261
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 7 cut(s) 70, 192, 195, 204, 207, 210, 261
FspBI CTAG 1 cut(s) 359
GlaI GCGC 3 cut(s) 68, 142, 269
GluI GCNGC 7 cut(s) 70, 192, 195, 204, 207, 210, 261
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 4 cut(s) 62, 263, 329, 383
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 266
HhaI GCGC 3 cut(s) 69, 143, 270
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 3 cut(s) 67, 141, 268
HinP1I GCGC 3 cut(s) 67, 141, 268
HinfI GANTC 2 cut(s) 149, 242
HpaII CCGG 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 373
Hpy99I CGWCG 5 cut(s) 137, 182, 260, 299, 350
HpyAV CCTTC 3 cut(s) 52, 167, 373
HpyCH4III ACNGT 2 cut(s) 368, 395
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 200, 203, 209, 215
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 3 cut(s) 67, 141, 268
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 4 cut(s) 120, 215, 221, 227
LpnPI CCDG 4 cut(s) 138, 204, 210, 226
Lsp1109I GCAGC 5 cut(s) 81, 203, 206, 215, 221
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 23, 128, 130, 343
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 213
MvnI CGCG 2 cut(s) 67, 260
MwoI GCNNNNNNNGC 5 cut(s) 191, 200, 203, 209, 215
NarI GGCGCC 1 cut(s) 141
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 2 cut(s) 9, 142
PciSI GCTCTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 7 cut(s) 71, 193, 196, 205, 208, 211, 262
PleI GAGTC 1 cut(s) 250
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 9, 142
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 293
SatI GCNGC 7 cut(s) 70, 192, 195, 204, 207, 210, 261
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 288
SetI ASST 4 cut(s) 44, 117, 135, 288
SfaNI GCATC 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 142
SsiI CCGC 3 cut(s) 207, 260, 388
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 288
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 368, 395
TaiI ACGT 1 cut(s) 135
TaqI TCGA 6 cut(s) 81, 120, 135, 255, 297, 348
TauI GCSGC 2 cut(s) 209, 263
TfiI GAWTC 1 cut(s) 149
TseI GCWGC 5 cut(s) 69, 191, 194, 203, 209
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 368
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.