Rh7AG005200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017160
Physical Location & Seq
Reverse (-)
361317 .. 362375
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG005200.1

Sequence Viewer

Length: 411 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTTTGGCCACGCGCAGCAAAGCCATCGACAAGAAGAAGAAGAAGAAGAACAAGAAGAAGAAGCTCCTCGACAACCCTAACGTCGAGGGCGCCATTGACTCAGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATCGCAGCAGCAGAAGCAGCCGCAGCCGGAGCAGGAGCAGGAGCAGGAGCAGAAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGTTACGACCCCAAGGCCATTCAACAAAAGTCCGTCGAGGCTGTCCTAGACGACCGTGTCAAGAAGAAGGCCGACCGCTACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

136

Amino Acids

14.7

Weight (kDa)

8.99

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 143
AccII CGCG 2 cut(s) 67, 269
AciI CCGC 3 cut(s) 210, 269, 397
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 270
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 2 cut(s) 46, 344
AluBI AGCT 2 cut(s) 118, 295
AluI AGCT 2 cut(s) 118, 295
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 4 cut(s) 60, 270, 336, 390
ApeKI GCWGC 5 cut(s) 69, 194, 197, 206, 212
AspLEI GCGC 3 cut(s) 69, 146, 279
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 297
BarI GAAGNNNNNNTAC 2 cut(s) 308, 340
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 5 cut(s) 81, 206, 209, 218, 224
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 7 cut(s) 70, 195, 198, 207, 210, 213, 270
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 7 cut(s) 71, 196, 199, 208, 211, 214, 271
BmiI GGNNCC 2 cut(s) 9, 145
BmsI GCATC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 242, 274
Bpu1102I GCTNAGC 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 333
BseMII CTCAG 2 cut(s) 168, 174
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 5 cut(s) 81, 206, 209, 218, 224
Bsh1236I CGCG 2 cut(s) 67, 269
Bsh1285I CGRYCG 2 cut(s) 376, 397
BshFI GGCC 4 cut(s) 62, 272, 338, 392
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 376, 397
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 4 cut(s) 62, 272, 338, 392
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 3 cut(s) 210, 269, 397
BspANI GGCC 4 cut(s) 62, 272, 338, 392
BspCNI CTCAG 2 cut(s) 167, 173
BspFNI CGCG 2 cut(s) 67, 269
BspLI GGNNCC 2 cut(s) 9, 145
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 377, 404
Bst6I CTCTTC 2 cut(s) 243, 302
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 154, 160
BstFNI CGCG 2 cut(s) 67, 269
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 3 cut(s) 69, 146, 279
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 376, 397
BstMWI GCNNNNNNNGC 5 cut(s) 194, 203, 206, 212, 218
BstUI CGCG 2 cut(s) 67, 269
BstV1I GCAGC 5 cut(s) 81, 206, 209, 218, 224
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 62, 272, 338, 392
CfoI GCGC 3 cut(s) 69, 146, 279
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 280
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 154, 160
DinI GGCGCC 1 cut(s) 145
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 60, 270
Eam1104I CTCTTC 2 cut(s) 243, 302
EarI CTCTTC 2 cut(s) 243, 302
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 297
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 297
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 1 cut(s) 283
FaiI YATR 1 cut(s) 281
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 7 cut(s) 70, 195, 198, 207, 210, 213, 270
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 7 cut(s) 70, 195, 198, 207, 210, 213, 270
FspBI CTAG 1 cut(s) 368
GlaI GCGC 3 cut(s) 68, 145, 278
GluI GCNGC 7 cut(s) 70, 195, 198, 207, 210, 213, 270
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 4 cut(s) 62, 272, 338, 392
HapII CCGG 1 cut(s) 216
HgaI GACGC 1 cut(s) 275
HhaI GCGC 3 cut(s) 69, 146, 279
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 3 cut(s) 67, 144, 277
HinP1I GCGC 3 cut(s) 67, 144, 277
HinfI GANTC 2 cut(s) 152, 251
HpaII CCGG 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 382
Hpy99I CGWCG 5 cut(s) 140, 185, 269, 308, 359
HpyAV CCTTC 3 cut(s) 52, 170, 382
HpyCH4III ACNGT 2 cut(s) 377, 404
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 5 cut(s) 194, 203, 206, 212, 218
HpyF3I CTNAG 2 cut(s) 154, 160
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 3 cut(s) 67, 144, 277
KasI GGCGCC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 5 cut(s) 123, 218, 224, 230, 236
LpnPI CCDG 5 cut(s) 141, 207, 213, 219, 229
Lsp1109I GCAGC 5 cut(s) 81, 206, 209, 218, 224
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 297
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 2 cut(s) 146, 260
MnlI CCTC 4 cut(s) 23, 131, 133, 352
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 67, 269
MwoI GCNNNNNNNGC 5 cut(s) 194, 203, 206, 212, 218
NarI GGCGCC 1 cut(s) 144
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 9, 145
PciSI GCTCTTC 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 7 cut(s) 71, 196, 199, 208, 211, 214, 271
PleI GAGTC 2 cut(s) 146, 259
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 2 cut(s) 146, 259
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 9, 145
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SacI GAGCTC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 302
SatI GCNGC 7 cut(s) 70, 195, 198, 207, 210, 213, 270
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 2 cut(s) 146, 260
SduI GDGCHC 1 cut(s) 297
SetI ASST 4 cut(s) 44, 120, 138, 297
SfaNI GCATC 1 cut(s) 175
SfoI GGCGCC 1 cut(s) 145
SsiI CCGC 3 cut(s) 210, 269, 397
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 297
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 377, 404
TaiI ACGT 1 cut(s) 138
TaqI TCGA 6 cut(s) 81, 123, 138, 264, 306, 357
TauI GCSGC 2 cut(s) 212, 272
TseI GCWGC 5 cut(s) 69, 194, 197, 206, 212
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 377
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.