RchiOBHm_Chr7g0177391

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0017160
Physical Location & Seq
Reverse (-)
382352 .. 383990
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15800

Sequence Viewer

Length: 399 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTCTGGCCACGCGCAGCAAAGCCATCGACAAGAAAAAGAACAAGAAGAAGAAGAAGAAGCTCCTCAACAACCCTAACGTTGAGGGCGCCATTGACTCAGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATCGCAGCAGCAGAAGCAGCCGGAGCCGGAGCCGGAGCAGAAGAAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGTTACGACCCCAAGGCTATTCAACAAAAGTCCGTCGAGGCTGTCCTAGACGACCGTGTCAAGAAGAAGGCCGACCGCTACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

8.81

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 67, 257
AciI CCGC 2 cut(s) 257, 385
AclI AACGTT 1 cut(s) 132
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 258
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 2 cut(s) 46, 332
AluBI AGCT 2 cut(s) 115, 283
AluI AGCT 2 cut(s) 115, 283
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 3 cut(s) 60, 258, 378
ApeKI GCWGC 4 cut(s) 69, 191, 194, 203
AspLEI GCGC 3 cut(s) 69, 143, 267
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 285
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 4 cut(s) 81, 203, 206, 215
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 356
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 5 cut(s) 70, 192, 195, 204, 258
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 5 cut(s) 71, 193, 196, 205, 259
BmiI GGNNCC 4 cut(s) 9, 142, 211, 217
BmsI GCATC 1 cut(s) 172
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu1102I GCTNAGC 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 165, 171
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 81, 203, 206, 215
Bsh1236I CGCG 2 cut(s) 67, 257
Bsh1285I CGRYCG 2 cut(s) 364, 385
BshFI GGCC 3 cut(s) 62, 260, 380
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 2 cut(s) 364, 385
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 207, 213, 219
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 62, 260, 380
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 2 cut(s) 257, 385
BspANI GGCC 3 cut(s) 62, 260, 380
BspCNI CTCAG 2 cut(s) 164, 170
BspFNI CGCG 2 cut(s) 67, 257
BspLI GGNNCC 4 cut(s) 9, 142, 211, 217
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 2 cut(s) 365, 392
Bst6I CTCTTC 2 cut(s) 231, 290
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 151, 157
BstFNI CGCG 2 cut(s) 67, 257
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 69, 143, 267
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 364, 385
BstMWI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
BstUI CGCG 2 cut(s) 67, 257
BstV1I GCAGC 4 cut(s) 81, 203, 206, 215
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 3 cut(s) 62, 260, 380
CfoI GCGC 3 cut(s) 69, 143, 267
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 274
CviAII CATG 1 cut(s) 268
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 2 cut(s) 151, 157
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DrdI GACNNNNNNGTC 1 cut(s) 365
DseDI GACNNNNNNGTC 1 cut(s) 365
EaeI YGGCCR 2 cut(s) 60, 258
Eam1104I CTCTTC 2 cut(s) 231, 290
EarI CTCTTC 2 cut(s) 231, 290
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 271
FaiI YATR 1 cut(s) 269
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 5 cut(s) 70, 192, 195, 204, 258
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 5 cut(s) 70, 192, 195, 204, 258
FspBI CTAG 1 cut(s) 356
GlaI GCGC 3 cut(s) 68, 142, 266
GluI GCNGC 5 cut(s) 70, 192, 195, 204, 258
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 62, 260, 380
HapII CCGG 3 cut(s) 207, 213, 219
HgaI GACGC 1 cut(s) 263
HhaI GCGC 3 cut(s) 69, 143, 267
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 3 cut(s) 67, 141, 265
HinP1I GCGC 3 cut(s) 67, 141, 265
HinfI GANTC 3 cut(s) 55, 149, 239
HpaII CCGG 3 cut(s) 207, 213, 219
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 370
Hpy99I CGWCG 4 cut(s) 182, 257, 296, 347
HpyAV CCTTC 3 cut(s) 52, 167, 370
HpyCH4III ACNGT 2 cut(s) 365, 392
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
HpyF3I CTNAG 2 cut(s) 151, 157
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 3 cut(s) 67, 141, 265
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 4 cut(s) 120, 209, 215, 221
LpnPI CCDG 5 cut(s) 44, 138, 220, 226, 232
Lsp1109I GCAGC 4 cut(s) 81, 203, 206, 215
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 3 cut(s) 49, 143, 248
MnlI CCTC 4 cut(s) 23, 128, 130, 340
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 3 cut(s) 207, 213, 219
MvnI CGCG 2 cut(s) 67, 257
MwoI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
NarI GGCGCC 1 cut(s) 141
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 4 cut(s) 9, 142, 211, 217
PciSI GCTCTTC 1 cut(s) 290
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 5 cut(s) 71, 193, 196, 205, 259
PleI GAGTC 3 cut(s) 49, 143, 247
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 3 cut(s) 49, 143, 247
Psp124BI GAGCTC 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 9, 142, 211, 217
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 290
SatI GCNGC 5 cut(s) 70, 192, 195, 204, 258
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 3 cut(s) 49, 143, 248
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 44, 117, 135, 285
SfaNI GCATC 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 142
SsiI CCGC 2 cut(s) 257, 385
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 365, 392
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 81, 252, 294, 345
TauI GCSGC 1 cut(s) 260
TseI GCWGC 4 cut(s) 69, 191, 194, 203
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 365
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.