Rh7CG005300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017160
Physical Location & Seq
Reverse (-)
437117 .. 438226
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG005300.1

Sequence Viewer

Length: 456 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTTTGGCCACGCGCAGCAAAGCCATCGACAAGAAAAAGAACAAGAAGAAGAAGAAGAAGCTCCTCAACAACCCTAACGTCGACGGCGCCATTGACTCGGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATCGCAGCAGCAGAAGCAGCAGGAGCAGAAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGTTACGACCCCAAGGCCATTCAACAGAAAAGGCCGACCGCTACTGTAAATAATTTCAATTCTTCTTCAGGAGCATTACAGTGCAGTGGAGTTGCTGAGTTTGTAGACTCTTGTCTGGAGACTGTAATCCAGAATCAGCTAAACTCTCTTTGTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

151

Amino Acids

16.33

Weight (kDa)

6.35

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 2 cut(s) 135, 399
AccII CGCG 2 cut(s) 67, 242
AciI CCGC 2 cut(s) 242, 333
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 243
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 3 cut(s) 46, 317, 352
AluBI AGCT 3 cut(s) 115, 268, 433
AluI AGCT 3 cut(s) 115, 268, 433
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 2 cut(s) 2, 15
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 4 cut(s) 60, 243, 309, 326
ApeKI GCWGC 4 cut(s) 69, 191, 194, 203
AspLEI GCGC 3 cut(s) 69, 143, 252
AvaI CYCGRG 1 cut(s) 151
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 158, 270
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 4 cut(s) 81, 203, 206, 215
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 146, 154
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 5 cut(s) 70, 192, 195, 204, 243
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 5 cut(s) 71, 193, 196, 205, 244
BmeT110I CYCGRG 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 9, 142
BmsI GCATC 1 cut(s) 172
BoxI GACNNNNGTC 1 cut(s) 405
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 171, 381
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 81, 203, 206, 215
BsgI GTGCAG 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 67, 242
Bsh1285I CGRYCG 1 cut(s) 333
BshFI GGCC 4 cut(s) 62, 245, 311, 328
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 151
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 407
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 4 cut(s) 62, 245, 311, 328
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 158, 270
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 2 cut(s) 242, 333
BspANI GGCC 4 cut(s) 62, 245, 311, 328
BspCNI CTCAG 2 cut(s) 170, 382
BspFNI CGCG 2 cut(s) 67, 242
BspLI GGNNCC 2 cut(s) 9, 142
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 340, 375, 418
Bst6I CTCTTC 2 cut(s) 216, 275
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 2 cut(s) 157, 390
BstFNI CGCG 2 cut(s) 67, 242
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 3 cut(s) 69, 143, 252
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 333
BstMWI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
BstPAI GACNNNNGTC 1 cut(s) 405
BstUI CGCG 2 cut(s) 67, 242
BstV1I GCAGC 4 cut(s) 81, 203, 206, 215
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 62, 245, 311, 328
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 2 cut(s) 380, 385
CfoI GCGC 3 cut(s) 69, 143, 252
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 157, 390
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 2 cut(s) 60, 243
Eam1104I CTCTTC 2 cut(s) 216, 275
EarI CTCTTC 2 cut(s) 216, 275
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 158, 270
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 158, 270
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 252
FblI GTMKAC 2 cut(s) 135, 399
Fnu4HI GCNGC 5 cut(s) 70, 192, 195, 204, 243
FriOI GRGCYC 2 cut(s) 158, 270
Fsp4HI GCNGC 5 cut(s) 70, 192, 195, 204, 243
GlaI GCGC 3 cut(s) 68, 142, 251
GluI GCNGC 5 cut(s) 70, 192, 195, 204, 243
GsuI CTGGAG 1 cut(s) 431
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 4 cut(s) 62, 245, 311, 328
HgaI GACGC 1 cut(s) 248
HhaI GCGC 3 cut(s) 69, 143, 252
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 3 cut(s) 67, 141, 250
HinP1I GCGC 3 cut(s) 67, 141, 250
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 149, 224, 401, 427
Hpy166II GTNNAC 2 cut(s) 136, 400
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 363, 410, 424
Hpy8I GTNNAC 2 cut(s) 136, 400
Hpy99I CGWCG 5 cut(s) 137, 140, 182, 242, 281
HpyAV CCTTC 2 cut(s) 52, 167
HpyCH4III ACNGT 3 cut(s) 340, 375, 418
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 185, 378
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
HpyF3I CTNAG 2 cut(s) 157, 390
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 3 cut(s) 67, 141, 250
KasI GGCGCC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 3 cut(s) 120, 209, 365
LpnPI CCDG 4 cut(s) 192, 348, 395, 437
Lsp1109I GCAGC 4 cut(s) 81, 203, 206, 215
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 158, 270
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 346, 352
MluNI TGGCCA 1 cut(s) 62
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 3 cut(s) 143, 233, 395
MnlI CCTC 2 cut(s) 23, 128
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 454
MslI CAYNNNNRTG 1 cut(s) 373
Msp20I TGGCCA 1 cut(s) 62
MvnI CGCG 2 cut(s) 67, 242
MwoI GCNNNNNNNGC 4 cut(s) 191, 200, 203, 209
NarI GGCGCC 1 cut(s) 141
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 9, 142
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 5 cut(s) 71, 193, 196, 205, 244
PleI GAGTC 3 cut(s) 143, 232, 395
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 3 cut(s) 143, 232, 395
PshAI GACNNNNGTC 1 cut(s) 405
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 9, 142
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 373
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 5 cut(s) 70, 192, 195, 204, 243
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 3 cut(s) 143, 233, 395
SduI GDGCHC 2 cut(s) 158, 270
SetI ASST 5 cut(s) 44, 117, 135, 270, 435
SfaNI GCATC 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 142
SgrDI CGTCGACG 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 373
Sse9I AATT 2 cut(s) 346, 352
SsiI CCGC 2 cut(s) 242, 333
SspDI GGCGCC 1 cut(s) 140
SstI GAGCTC 1 cut(s) 270
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 340, 375, 418
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 81, 135, 237, 279
TasI AATT 2 cut(s) 346, 352
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 2 cut(s) 380, 385
TseI GCWGC 4 cut(s) 69, 191, 194, 203
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 2 cut(s) 380, 385
XmiI GTMKAC 2 cut(s) 135, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.