Prupe.5G241900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0017160
Physical Location & Seq
Forward (+)
18206881 .. 18209068
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G241900.1

Sequence Viewer

Length: 381 bp
ATGTCAGATCCGTTCGAGAGAGTGAAAGCAGGCAGGCTGACCTTCAAAGATGGAAGTGTGGCCACTCGCAGCAAAGCCATCGACAAGAAGAAGAACAAGAAGAAGAAGAAGAAGCAGCAGCAGCTTAATCCTAACGACGATGGCCCTAACCCTACTGGGCCCACCGACCTTGAGGTAGTGCCTGAGGACGCAGGCGCAGAAGCAGCAGCCGGAGGACCTGAGACTTACACCATTGACGCGGCGAAGCGCATGAAGTACGATCAACTCTTCCCCGTCGAGGCCAAGAAGTTCGGTTACGATCCCAAATCTGTCGCACACAAGTCCATCGAGGACGCTCTTGACGACCGTGTCAAGAAGAAAGCCGACCGCTACTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

9.41

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccII CGCG 1 cut(s) 239
AciI CCGC 2 cut(s) 239, 367
AclWI GGATC 2 cut(s) 2, 293
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 2, 293
AoxI GGCC 4 cut(s) 60, 142, 158, 279
ApaI GGGCCC 1 cut(s) 162
ApeKI GCWGC 6 cut(s) 69, 115, 118, 121, 203, 206
AspLEI GCGC 2 cut(s) 197, 249
AspS9I GGNCC 4 cut(s) 143, 158, 159, 215
AvaII GGWCC 1 cut(s) 215
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 162
BalI TGGCCA 1 cut(s) 62
BanII GRGCYC 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbvI GCAGC 6 cut(s) 81, 127, 130, 133, 215, 218
BccI CCATC 4 cut(s) 44, 86, 134, 332
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 7 cut(s) 70, 116, 119, 122, 204, 207, 240
BlsI GCNGC 7 cut(s) 71, 117, 120, 123, 205, 208, 241
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 4 cut(s) 143, 158, 159, 215
BmiI GGNNCC 1 cut(s) 160
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 2 cut(s) 174, 210
BseNI ACTGG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 6 cut(s) 81, 127, 130, 133, 215, 218
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 2 cut(s) 346, 367
BshFI GGCC 4 cut(s) 62, 144, 160, 281
BsiEI CGRYCG 2 cut(s) 346, 367
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 4 cut(s) 62, 144, 160, 281
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 7, 259, 298
BspACI CCGC 2 cut(s) 239, 367
BspANI GGCC 4 cut(s) 62, 144, 160, 281
BspCNI CTCAG 2 cut(s) 175, 211
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 2 cut(s) 2, 293
BsrI ACTGG 1 cut(s) 160
BssMI GATC 3 cut(s) 7, 259, 298
Bst4CI ACNGT 2 cut(s) 347, 374
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 31, 35, 193
BstDEI CTNAG 2 cut(s) 183, 219
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 2 cut(s) 197, 249
BstKTI GATC 3 cut(s) 10, 262, 301
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 3 cut(s) 7, 259, 298
BstMCI CGRYCG 2 cut(s) 346, 367
BstMWI GCNNNNNNNGC 2 cut(s) 121, 203
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 6 cut(s) 81, 127, 130, 133, 215, 218
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 4 cut(s) 62, 144, 160, 281
Cac8I GCNNGC 3 cut(s) 31, 35, 193
CfoI GCGC 2 cut(s) 197, 249
Cfr13I GGNCC 4 cut(s) 143, 158, 159, 215
CseI GACGC 3 cut(s) 197, 245, 341
Csp6I GTAC 1 cut(s) 256
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 250
CviJI RGCY 9 cut(s) 37, 62, 77, 124, 144, 160, 209, 281, 362
CviKI_1 RGCY 9 cut(s) 37, 62, 77, 124, 144, 160, 209, 281, 362
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 183, 219
DpnI GATC 3 cut(s) 9, 261, 300
DpnII GATC 3 cut(s) 7, 259, 298
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 253
FaiI YATR 1 cut(s) 251
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 7 cut(s) 70, 116, 119, 122, 204, 207, 240
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 7 cut(s) 70, 116, 119, 122, 204, 207, 240
GlaI GCGC 2 cut(s) 196, 248
GluI GCNGC 7 cut(s) 70, 116, 119, 122, 204, 207, 240
HaeIII GGCC 4 cut(s) 62, 144, 160, 281
HapII CCGG 1 cut(s) 210
HgaI GACGC 3 cut(s) 197, 245, 341
HhaI GCGC 2 cut(s) 197, 249
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 2 cut(s) 195, 247
HinP1I GCGC 2 cut(s) 195, 247
HpaII CCGG 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 16, 338, 352
Hpy99I CGWCG 2 cut(s) 140, 278
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 2 cut(s) 347, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 203
HpyF3I CTNAG 2 cut(s) 183, 219
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 2 cut(s) 195, 247
Kzo9I GATC 3 cut(s) 7, 259, 298
LpnPI CCDG 7 cut(s) 15, 19, 141, 177, 195, 223, 231
Lsp1109I GCAGC 6 cut(s) 81, 127, 130, 133, 215, 218
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 9, 261, 300
MboI GATC 3 cut(s) 7, 259, 298
MboII GAAGA 8 cut(s) 100, 103, 112, 115, 118, 121, 259, 367
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 162
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 5 cut(s) 166, 178, 206, 271, 322
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 121, 203
NdeII GATC 3 cut(s) 7, 259, 298
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 7 cut(s) 71, 117, 120, 123, 205, 208, 241
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 160
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 4 cut(s) 143, 158, 159, 215
PspPPI RGGWCCY 1 cut(s) 215
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 7 cut(s) 70, 116, 119, 122, 204, 207, 240
Sau3AI GATC 3 cut(s) 7, 259, 298
Sau96I GGNCC 4 cut(s) 143, 158, 159, 215
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 44, 126, 171, 177, 220
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SsiI CCGC 2 cut(s) 239, 367
TaaI ACNGT 2 cut(s) 347, 374
TaqI TCGA 4 cut(s) 15, 81, 276, 327
TauI GCSGC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 6 cut(s) 69, 115, 118, 121, 203, 206
TspDTI ATGAA 1 cut(s) 266
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.