Rh7BG005200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017160
Physical Location & Seq
Reverse (-)
326871 .. 328562
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG005200.1

Sequence Viewer

Length: 396 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTTTGGCCACGCGCAGCAAAGCCATCGACAAGAAAAAGAACAAGAAGAAGAAGAAGAAGCTCCTCCTCAACAACCCTAATGTCGACGGTGCCGTTGACTCAGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATAGCTGCAGCAGAAGCAGCCGGAGCCGGAGCAGGAGCAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGTTACGACCCCAAGGCCATTCAACAAAAGTCCGTCGAGGCTGTCCTAGACGACCGTGTCAAGAAGAAGGCCGACCGCTACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

131

Amino Acids

14.26

Weight (kDa)

9.16

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 67, 254
AciI CCGC 2 cut(s) 254, 382
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 255
AfaI GTAC 1 cut(s) 272
AgsI TTSAA 2 cut(s) 46, 329
AluBI AGCT 3 cut(s) 115, 194, 280
AluI AGCT 3 cut(s) 115, 194, 280
Alw21I GWGCWC 1 cut(s) 282
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 4 cut(s) 60, 255, 321, 375
ApeKI GCWGC 4 cut(s) 69, 194, 197, 206
AspLEI GCGC 2 cut(s) 69, 264
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 4 cut(s) 81, 181, 209, 218
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 131, 149
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 5 cut(s) 70, 195, 198, 207, 255
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 5 cut(s) 71, 196, 199, 208, 256
BmiI GGNNCC 3 cut(s) 9, 145, 214
BmsI GCATC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu1102I GCTNAGC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 168, 174
BseRI GAGGAG 2 cut(s) 107, 110
BseXI GCAGC 4 cut(s) 81, 181, 209, 218
Bsh1236I CGCG 2 cut(s) 67, 254
Bsh1285I CGRYCG 2 cut(s) 361, 382
BshFI GGCC 4 cut(s) 62, 257, 323, 377
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 361, 382
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 2 cut(s) 210, 216
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 4 cut(s) 62, 257, 323, 377
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 2 cut(s) 254, 382
BspANI GGCC 4 cut(s) 62, 257, 323, 377
BspCNI CTCAG 2 cut(s) 167, 173
BspFNI CGCG 2 cut(s) 67, 254
BspLI GGNNCC 3 cut(s) 9, 145, 214
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 318
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 143, 362, 389
Bst6I CTCTTC 2 cut(s) 228, 287
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 154, 160
BstFNI CGCG 2 cut(s) 67, 254
BstHHI GCGC 2 cut(s) 69, 264
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 361, 382
BstMWI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 2 cut(s) 67, 254
BstV1I GCAGC 4 cut(s) 81, 181, 209, 218
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 62, 257, 323, 377
CfoI GCGC 2 cut(s) 69, 264
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 265
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 154, 160
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 2 cut(s) 60, 255
Eam1104I CTCTTC 2 cut(s) 228, 287
EarI CTCTTC 2 cut(s) 228, 287
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 282
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 1 cut(s) 268
FaiI YATR 1 cut(s) 266
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 70, 195, 198, 207, 255
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 5 cut(s) 70, 195, 198, 207, 255
FspBI CTAG 1 cut(s) 353
GlaI GCGC 2 cut(s) 68, 263
GluI GCNGC 5 cut(s) 70, 195, 198, 207, 255
HaeIII GGCC 4 cut(s) 62, 257, 323, 377
HapII CCGG 2 cut(s) 210, 216
HgaI GACGC 1 cut(s) 260
HhaI GCGC 2 cut(s) 69, 264
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 2 cut(s) 67, 262
HinP1I GCGC 2 cut(s) 67, 262
HincII GTYRAC 2 cut(s) 139, 151
HindII GTYRAC 2 cut(s) 139, 151
HinfI GANTC 2 cut(s) 152, 236
HpaII CCGG 2 cut(s) 210, 216
Hpy166II GTNNAC 2 cut(s) 139, 151
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 139, 151
Hpy99I CGWCG 5 cut(s) 143, 185, 254, 293, 344
HpyAV CCTTC 3 cut(s) 52, 170, 367
HpyCH4III ACNGT 3 cut(s) 143, 362, 389
HpyCH4V TGCA 2 cut(s) 188, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
HpyF3I CTNAG 2 cut(s) 154, 160
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 2 cut(s) 67, 262
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 120, 212, 218, 224
LpnPI CCDG 4 cut(s) 141, 207, 223, 229
Lsp1109I GCAGC 4 cut(s) 81, 181, 209, 218
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 8 cut(s) 112, 115, 118, 121, 242, 245, 274, 382
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 282
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 146, 245
MnlI CCTC 4 cut(s) 23, 128, 131, 337
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 2 cut(s) 210, 216
MvnI CGCG 2 cut(s) 67, 254
MwoI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 3 cut(s) 9, 145, 214
PciSI GCTCTTC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 5 cut(s) 71, 196, 199, 208, 256
PleI GAGTC 2 cut(s) 146, 244
PpsI GAGTC 2 cut(s) 146, 244
Psp124BI GAGCTC 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 9, 145, 214
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SacI GAGCTC 1 cut(s) 282
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 287
SatI GCNGC 5 cut(s) 70, 195, 198, 207, 255
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 2 cut(s) 146, 245
SduI GDGCHC 1 cut(s) 282
SetI ASST 4 cut(s) 44, 117, 196, 282
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 195
SsiI CCGC 2 cut(s) 254, 382
SspMI CTAG 1 cut(s) 353
SstI GAGCTC 1 cut(s) 282
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 143, 362, 389
TaqI TCGA 5 cut(s) 81, 138, 249, 291, 342
TauI GCSGC 1 cut(s) 257
TseI GCWGC 4 cut(s) 69, 194, 197, 206
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 328
Tth111I GACNNNGTC 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.