FvH4_5g18200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017160
Physical Location & Seq
Forward (+)
10469115 .. 10470629
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18200.t1

Sequence Viewer

Length: 384 bp
ATGTCGAGTCCGTACGAGAGAGTGAAAGGAGGGAGATTGACCTTCAAGGACGGCAGTGTAGCCACGCGCAGCAAAGCCATCGATAAGAAAAAGAAGAAGAAGCAGAAGAAGCTTCTCAAGAACCCTAACGACGATGCTGCGATCTCCTCCGTGGATCTGGAGGGCGACGATGCAGTCGCAGCCGCAGAAGCAGCAGCCGGAGAAGGAGCAGGAGCGGAAGAAGAGAGCTACACTATCGACGCGGCGAAGCGCATGAAGTACGATGAGCTCTTCCCCGTGGAAGCAAAGAAGTTCGGTTACGACCCCAAAGCGATTAAGCAAAAATCTGTCGAGGCTATTCTTGACGACCGTGTCAAGAAGAAGGCCGATCGCTACTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

128

Amino Acids

13.93

Weight (kDa)

9.26

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 173, 350
AccBSI CCGCTC 1 cut(s) 215
AccII CGCG 2 cut(s) 67, 242
AciI CCGC 3 cut(s) 183, 215, 242
AclWI GGATC 1 cut(s) 162
AfaI GTAC 2 cut(s) 14, 260
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 3 cut(s) 112, 228, 268
AluI AGCT 3 cut(s) 112, 228, 268
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 5 cut(s) 69, 137, 179, 191, 194
AspLEI GCGC 2 cut(s) 69, 252
BanII GRGCYC 1 cut(s) 270
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 5 cut(s) 81, 124, 191, 203, 206
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 119, 153
BisI GCNGC 7 cut(s) 70, 138, 180, 183, 192, 195, 243
BlsI GCNGC 7 cut(s) 71, 139, 181, 184, 193, 196, 244
BmsI GCATC 2 cut(s) 124, 160
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 150, 276
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 150, 276
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 5 cut(s) 81, 124, 191, 203, 206
Bsh1236I CGCG 2 cut(s) 67, 242
Bsh1285I CGRYCG 2 cut(s) 349, 370
BshFI GGCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 2 cut(s) 349, 370
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 198
BsiWI CGTACG 1 cut(s) 12
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 141, 154, 367
BspACI CCGC 3 cut(s) 183, 215, 242
BspANI GGCC 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 2 cut(s) 67, 242
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 215
BssECI CCNNGG 2 cut(s) 150, 276
BssMI GATC 3 cut(s) 141, 154, 367
Bst4CI ACNGT 2 cut(s) 350, 377
Bst6I CTCTTC 2 cut(s) 216, 275
BstDSI CCRYGG 2 cut(s) 150, 276
BstFNI CGCG 2 cut(s) 67, 242
BstHHI GCGC 2 cut(s) 69, 252
BstKTI GATC 3 cut(s) 144, 157, 370
BstMBI GATC 3 cut(s) 141, 154, 367
BstMCI CGRYCG 2 cut(s) 349, 370
BstMWI GCNNNNNNNGC 4 cut(s) 109, 179, 188, 191
BstUI CGCG 2 cut(s) 67, 242
BstV1I GCAGC 5 cut(s) 81, 124, 191, 203, 206
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 365
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 2 cut(s) 150, 276
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 61
CfoI GCGC 2 cut(s) 69, 252
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 13, 259
CviAII CATG 1 cut(s) 253
CviJI RGCY 9 cut(s) 62, 77, 112, 182, 197, 228, 268, 335, 365
CviKI_1 RGCY 9 cut(s) 62, 77, 112, 182, 197, 228, 268, 335, 365
CviQI GTAC 2 cut(s) 13, 259
DpnI GATC 3 cut(s) 143, 156, 369
DpnII GATC 3 cut(s) 141, 154, 367
DrdI GACNNNNNNGTC 2 cut(s) 173, 350
DseDI GACNNNNNNGTC 2 cut(s) 173, 350
Eam1104I CTCTTC 2 cut(s) 216, 275
EarI CTCTTC 2 cut(s) 216, 275
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 7 cut(s) 70, 138, 180, 183, 192, 195, 243
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 7 cut(s) 70, 138, 180, 183, 192, 195, 243
GlaI GCGC 2 cut(s) 68, 251
GluI GCNGC 7 cut(s) 70, 138, 180, 183, 192, 195, 243
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 69, 252
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 67, 250
HinP1I GCGC 2 cut(s) 67, 250
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 198
Hpy188III TCNNGA 4 cut(s) 118, 158, 341, 355
Hpy99I CGWCG 3 cut(s) 134, 170, 242
HpyAV CCTTC 3 cut(s) 52, 197, 355
HpyCH4III ACNGT 2 cut(s) 350, 377
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 179, 188, 191
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 67, 250
Kzo9I GATC 3 cut(s) 141, 154, 367
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 2 cut(s) 206, 212
LpnPI CCDG 3 cut(s) 143, 195, 211
Lsp1109I GCAGC 5 cut(s) 81, 124, 191, 203, 206
LweI GCATC 2 cut(s) 124, 160
MaeIII GTNAC 1 cut(s) 296
MalI GATC 3 cut(s) 143, 156, 369
MbiI CCGCTC 1 cut(s) 215
MboI GATC 3 cut(s) 141, 154, 367
MboII GAAGA 7 cut(s) 106, 109, 118, 230, 233, 262, 370
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 270
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 4 cut(s) 23, 154, 157, 325
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 198
MvnI CGCG 2 cut(s) 67, 242
MwoI GCNNNNNNNGC 4 cut(s) 109, 179, 188, 191
NdeII GATC 3 cut(s) 141, 154, 367
NlaIII CATG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 275
Pfl23II CGTACG 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 7 cut(s) 71, 139, 181, 184, 193, 196, 244
Ple19I CGATCG 1 cut(s) 370
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp124BI GAGCTC 1 cut(s) 270
PspLI CGTACG 1 cut(s) 12
PsuI RGATCY 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 350
PvuI CGATCG 1 cut(s) 370
RsaI GTAC 2 cut(s) 14, 260
RsaNI GTAC 2 cut(s) 13, 259
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 7 cut(s) 70, 138, 180, 183, 192, 195, 243
Sau3AI GATC 3 cut(s) 141, 154, 367
SchI GAGTC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 44, 114, 230, 270
SfaNI GCATC 2 cut(s) 124, 160
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 3 cut(s) 183, 215, 242
SstI GAGCTC 1 cut(s) 270
TaaI ACNGT 2 cut(s) 350, 377
TaqI TCGA 4 cut(s) 5, 81, 237, 330
TauI GCSGC 2 cut(s) 185, 245
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 61
TseI GCWGC 5 cut(s) 69, 137, 179, 191, 194
TspDTI ATGAA 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.