RLG00000005540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017160
Physical Location & Seq
Forward (+)
68402076 .. 68403229
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005540

Sequence Viewer

Length: 426 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTTTGGCCACGCGCAGCAAAGCCATCGACAAGAAACAGAAGAAGAAGAAGAAGAAGCTCCTCAACAACCCTAACGTCGACGGTGCCATTGACTCAGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATCGCAGCAGCAGAAGCTACCGGAGCAGGAGCAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGGCCGACCGCTACTGTAAATAATTTCAATTCTTCTTCAGGAGCATTGCAATGCAGTGGAGTTGCTGAGTTTGTAGACTCTTGTCTGGATTCTGTAATCCAGAATCAGCTAAACTCTCTTTGTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

142

Amino Acids

14.98

Weight (kDa)

5.24

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017160)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25720
fragaria_vesca FvH4_5g18200
malus_domestica MD14G1244400.v1.1
prunus_persica Prupe.5G241900_v2.0.a1
pyrus_communis pycom14g20550
rosa_chinensis RchiOBHm_Chr7g0177391
rosa_laevigata RLG00000005540
rosa_multiflora Rmu_sc0005545.1_g000002
rosa_rugosa Rorug06G0405500
rosa_samantha Rh7AG005200 Rh7BG005200 Rh7CG005300
rosa_wichuraiana Rw7G000430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 2 cut(s) 132, 369
AccII CGCG 2 cut(s) 67, 242
AciI CCGC 2 cut(s) 242, 303
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 243
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 2 cut(s) 46, 322
AluBI AGCT 4 cut(s) 112, 200, 268, 403
AluI AGCT 4 cut(s) 112, 200, 268, 403
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 3 cut(s) 60, 243, 296
ApeKI GCWGC 3 cut(s) 69, 188, 191
AspLEI GCGC 2 cut(s) 69, 252
AspS9I GGNCC 1 cut(s) 296
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 81, 200, 203
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BisI GCNGC 4 cut(s) 70, 189, 192, 243
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 4 cut(s) 71, 190, 193, 244
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 9, 139
BmsI GCATC 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 375
BplI GAGNNNNNCTC 2 cut(s) 215, 247
Bpu1102I GCTNAGC 1 cut(s) 154
BsaWI WCCGGW 1 cut(s) 203
Bse3DI GCAATG 2 cut(s) 338, 350
BseMI GCAATG 2 cut(s) 338, 350
BseMII CTCAG 3 cut(s) 162, 168, 351
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 81, 200, 203
Bsh1236I CGCG 2 cut(s) 67, 242
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 62, 245, 298
BshNI GGYRCC 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 3 cut(s) 62, 245, 298
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 2 cut(s) 242, 303
BspANI GGCC 3 cut(s) 62, 245, 298
BspCNI CTCAG 3 cut(s) 161, 167, 352
BspFNI CGCG 2 cut(s) 67, 242
BspLI GGNNCC 2 cut(s) 9, 139
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 338, 350
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 137, 310
Bst6I CTCTTC 2 cut(s) 216, 275
BstDEI CTNAG 3 cut(s) 148, 154, 360
BstFNI CGCG 2 cut(s) 67, 242
BstHHI GCGC 2 cut(s) 69, 252
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 3 cut(s) 188, 197, 206
BstPAI GACNNNNGTC 1 cut(s) 375
BstUI CGCG 2 cut(s) 67, 242
BstV1I GCAGC 3 cut(s) 81, 200, 203
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 3 cut(s) 62, 245, 298
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
CfoI GCGC 2 cut(s) 69, 252
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 253
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 148, 154, 360
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EaeI YGGCCR 2 cut(s) 60, 243
Eam1104I CTCTTC 2 cut(s) 216, 275
EarI CTCTTC 2 cut(s) 216, 275
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 315
EcoICRI GAGCTC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 1 cut(s) 256
FaiI YATR 1 cut(s) 254
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 252
FblI GTMKAC 2 cut(s) 132, 369
Fnu4HI GCNGC 4 cut(s) 70, 189, 192, 243
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 4 cut(s) 70, 189, 192, 243
GlaI GCGC 2 cut(s) 68, 251
GluI GCNGC 4 cut(s) 70, 189, 192, 243
HaeIII GGCC 3 cut(s) 62, 245, 298
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 69, 252
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 2 cut(s) 67, 250
HinP1I GCGC 2 cut(s) 67, 250
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 5 cut(s) 146, 224, 371, 383, 397
HpaII CCGG 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 133, 370
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 333, 380, 394
Hpy8I GTNNAC 2 cut(s) 133, 370
Hpy99I CGWCG 5 cut(s) 134, 137, 179, 242, 281
HpyAV CCTTC 2 cut(s) 52, 164
HpyCH4III ACNGT 2 cut(s) 137, 310
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 182, 343, 348
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 197, 206
HpyF3I CTNAG 3 cut(s) 148, 154, 360
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 2 cut(s) 67, 250
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 4 cut(s) 117, 206, 212, 335
LpnPI CCDG 6 cut(s) 135, 195, 217, 318, 365, 407
Lsp1109I GCAGC 3 cut(s) 81, 200, 203
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 129
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 270
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 2 cut(s) 316, 322
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 3 cut(s) 140, 233, 365
MnlI CCTC 2 cut(s) 23, 125
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 343
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 204
MvnI CGCG 2 cut(s) 67, 242
MwoI GCNNNNNNNGC 3 cut(s) 188, 197, 206
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 2 cut(s) 9, 139
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 383, 397
PkrI GCNGC 4 cut(s) 71, 190, 193, 244
PleI GAGTC 3 cut(s) 140, 232, 365
PpsI GAGTC 3 cut(s) 140, 232, 365
PshAI GACNNNNGTC 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 9, 139
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 343
SacI GAGCTC 1 cut(s) 270
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 424
SatI GCNGC 4 cut(s) 70, 189, 192, 243
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 3 cut(s) 140, 233, 365
SduI GDGCHC 1 cut(s) 270
SetI ASST 6 cut(s) 44, 114, 132, 202, 270, 405
SfaNI GCATC 1 cut(s) 169
SgrDI CGTCGACG 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 2 cut(s) 316, 322
SsiI CCGC 2 cut(s) 242, 303
SstI GAGCTC 1 cut(s) 270
TaaI ACNGT 2 cut(s) 137, 310
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 81, 132, 237, 279
TasI AATT 2 cut(s) 316, 322
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 2 cut(s) 383, 397
Tru1I TTAA 1 cut(s) 424
Tru9I TTAA 1 cut(s) 424
TscAI CASTG 1 cut(s) 355
TseI GCWGC 3 cut(s) 69, 188, 191
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 1 cut(s) 355
XmiI GTMKAC 2 cut(s) 132, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.