AT2G25940

Vacuolar-processing enzyme

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11063301 .. 11066184
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25940.1

Sequence Viewer

Length: 1437 bp
ATGACCACCGTCGTTTCCTTTCTCGCCCTCTTCCTCTTTCTAGTCGCCGCCGTTTCTGGTGACGTCATCAAACTTCCTTCTCTAGCTTCTAAGTTCTTCCGCCCAACTGAAAACGACGATGATTCTACTAAGTGGGCTGTTCTCGTCGCCGGATCCAGCGGATACTGGAATTATCGTCATCAGGCGGATGTTTGTCATGCTTATCAGCTTTTGAAGAAAGGTGGAGTGAAAGAGGAGAATATTGTGGTGTTTATGTATGATGACATTGCGAAGAACGAGGAGAATCCAAGACCTGGAGTTATTATCAATAGTCCTAATGGAGAGGATGTCTATAATGGAGTTCCCAAGGATTACACTGGAGATGAAGTTAATGTTGATAACTTATTAGCTGTGATTCTTGGAAACAAAACGGCTCTTAAAGGAGGAAGTGGGAAAGTTGTAGATAGCGGTCCAAACGATCATATCTTTATATACTATAGTGATCACGGTGGTCCGGGAGTGCTCGGGATGCCAACTTCTCCAAACCTATATGCAAATGATCTCAATGATGTCTTGAAGAAAAAATATGCTTCAGGAACATATAAGAGCTTGGTGTTTTATTTGGAGGCTTGTGAATCTGGAAGTATTTTTGAAGGTCTTTTACCAGAGGGTTTAAATATTTACGCGACAACTGCATCGAATGCAGAAGAAAGTAGCTGGGGTACTTACTGTCCTGGAGAGGATCCTAGTCCTCCTTCTGAGTATGAGACCTGTTTGGGTGACTTATACAGTGTTGCTTGGATAGAAGATAGTGAAAAACACAATTTACAAACAGAGACTTTGCACGAGCAATATGAATTGGTGAAAAAGAGAACTGCAGGTTCTGGTAAGTCTTATGGTTCTCATGTTATGGAATTTGGAGATATAGGACTCAGCAAGGAGAAGCTTGTCCTTTTTATGGGTACAAATCCAGCAGATGAAAACTTCACCTTTGTGAATGAGAATTCAATAAGGCCGCCTTCAAGAGTTACAAACCAGCGTGATGCGGATCTTGTCCATTTCTGGCATAAGTATCAAAAGGCACCGGAAGGGTCAGCAAGAAAAGTTGAAGCTCAGAAGCAAGTCCTTGAAGCAATGTCTCACAGACTTCATGTTGATAATAGCATTCTGTTGATTGGGATTCTTTTGTTTGGTTTGGAAGGTCATGCGGTGTTAAATAAAGTCCGGCCTTCTGGAGAACCGCTTGTTGACGATTGGGACTGCCTTAAATCTCTGGTGAGAGCTTTCGAGAGGCACTGTGGATCGTTGTCTCAGTACGGAATAAAGCACATGAGGTCGATTGCAAACATGTGCAACGCAGGGATTCAGATGAGGCAAATGGAGGAGGCAGCAATGCAGGCTTGTCCCACCATCCCTACCAGTCCTTGGAGCTCTCTTGACCGTGGATTCAGTGCTTGA

Protein Analysis

478

Amino Acids

52.67

Weight (kDa)

5.25

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 44 - 315 4.6e-118 Peptidase C13 family
Legum_prodom PF20985 366 - 461 7.1e-39 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009785)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc36I ACCTGC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 1060
AccB7I CCANNNNNTGG 2 cut(s) 293, 1404
AccII CGCG 1 cut(s) 665
AciI CCGC 9 cut(s) 48, 100, 159, 185, 447, 995, 1025, 1187, 1220
AclWI GGATC 6 cut(s) 147, 160, 716, 729, 1035, 1288
AcsI RAATTY 2 cut(s) 893, 982
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 3 cut(s) 703, 943, 1295
AfiI CCNNNNNNNGG 3 cut(s) 293, 937, 1404
AflIII ACRYGT 1 cut(s) 1326
AgsI TTSAA 7 cut(s) 214, 556, 632, 987, 1002, 1088, 1109
AjnI CCWGG 2 cut(s) 292, 712
AleI CACNNNNGTG 1 cut(s) 971
AluBI AGCT 9 cut(s) 86, 208, 389, 588, 696, 925, 1091, 1262, 1410
AluI AGCT 9 cut(s) 86, 208, 389, 588, 696, 925, 1091, 1262, 1410
Alw21I GWGCWC 2 cut(s) 504, 1412
Alw26I GTCTC 4 cut(s) 740, 809, 1122, 1293
AlwI GGATC 6 cut(s) 147, 160, 716, 729, 1035, 1288
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 2 cut(s) 992, 1205
ApeKI GCWGC 1 cut(s) 1367
ApoI RAATTY 2 cut(s) 893, 982
AspS9I GGNCC 2 cut(s) 449, 491
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 5 cut(s) 71, 770, 853, 958, 1267
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 2 cut(s) 449, 491
BamHI GGATCC 2 cut(s) 152, 721
BanI GGYRCC 1 cut(s) 1060
BanII GRGCYC 1 cut(s) 1412
BarI GAAGNNNNNNTAC 2 cut(s) 624, 656
BauI CACGAG 1 cut(s) 824
Bbv12I GWGCWC 2 cut(s) 504, 1412
BbvI GCAGC 1 cut(s) 1379
BccI CCATC 1 cut(s) 1397
BceAI ACGGC 2 cut(s) 35, 426
BciT130I CCWGG 2 cut(s) 294, 714
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 4 cut(s) 740, 809, 1122, 1293
BfaI CTAG 3 cut(s) 41, 83, 726
BfmI CTRYAG 2 cut(s) 475, 855
BfuAI ACCTGC 1 cut(s) 848
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 3 cut(s) 48, 995, 1368
BlsI GCNGC 3 cut(s) 49, 996, 1369
Bme1390I CCNGG 3 cut(s) 294, 495, 714
Bme18I GGWCC 2 cut(s) 449, 491
BmeT110I CYCGRG 1 cut(s) 503
BmgT120I GGNCC 2 cut(s) 449, 491
BmiI GGNNCC 3 cut(s) 154, 723, 1062
BmrFI CCNGG 3 cut(s) 294, 495, 714
BmsI GCATC 3 cut(s) 498, 683, 1012
BoxI GACNNNNGTC 1 cut(s) 8
BpmI CTGGAG 4 cut(s) 315, 378, 735, 1233
BpuMI CCSGG 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 740
BsaJI CCNNGG 3 cut(s) 345, 1403, 1420
BsaWI WCCGGW 1 cut(s) 1063
BsaXI ACNNNNNCTCC 4 cut(s) 312, 342, 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 937, 1404
Bse1I ACTGG 3 cut(s) 170, 361, 1398
Bse3DI GCAATG 3 cut(s) 264, 1119, 1377
Bse8I GATNNNNATC 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 294, 714
BseDI CCNNGG 3 cut(s) 345, 1403, 1420
BseGI GGATG 4 cut(s) 193, 331, 513, 1389
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 3 cut(s) 293, 937, 1404
BseMI GCAATG 3 cut(s) 264, 1119, 1377
BseMII CTCAG 4 cut(s) 729, 925, 1106, 1304
BseNI ACTGG 3 cut(s) 170, 361, 1398
BseRI GAGGAG 3 cut(s) 248, 293, 1376
BseXI GCAGC 1 cut(s) 1379
BseYI CCCAGC 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 2 cut(s) 994, 1207
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 2 cut(s) 504, 1412
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 4 cut(s) 150, 494, 1064, 1204
BslFI GGGAC 2 cut(s) 1250, 1368
BslI CCNNNNNNNGG 3 cut(s) 293, 937, 1404
BsmAI GTCTC 4 cut(s) 740, 809, 1122, 1293
BsmFI GGGAC 2 cut(s) 1250, 1368
BsmI GAATGC 2 cut(s) 685, 1143
BsnI GGCC 2 cut(s) 994, 1207
Bso31I GGTCTC 1 cut(s) 740
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 504, 1412
Bsp143I GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
BspACI CCGC 9 cut(s) 48, 100, 159, 185, 447, 995, 1025, 1187, 1220
BspANI GGCC 2 cut(s) 994, 1207
BspCNI CTCAG 4 cut(s) 730, 924, 1105, 1303
BspFNI CGCG 1 cut(s) 665
BspLI GGNNCC 3 cut(s) 154, 723, 1062
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 848
BspPI GGATC 6 cut(s) 147, 160, 716, 729, 1035, 1288
BspT107I GGYRCC 1 cut(s) 1060
BspTNI GGTCTC 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 264, 1119, 1377
BsrI ACTGG 3 cut(s) 170, 361, 1398
BssECI CCNNGG 3 cut(s) 345, 1403, 1420
BssMI GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 824
BssT1I CCWWGG 2 cut(s) 345, 1403
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 2 cut(s) 294, 714
Bst4CI ACNGT 6 cut(s) 10, 488, 710, 770, 1277, 1421
Bst6I CTCTTC 1 cut(s) 35
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 1377
BstDEI CTNAG 6 cut(s) 90, 129, 738, 911, 1092, 1290
BstDSI CCRYGG 1 cut(s) 1420
BstF5I GGATG 4 cut(s) 193, 331, 513, 1389
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 7 cut(s) 155, 460, 484, 541, 724, 1030, 1283
BstMAI GTCTC 4 cut(s) 740, 809, 1122, 1293
BstMBI GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
BstMWI GCNNNNNNNGC 4 cut(s) 508, 671, 680, 1376
BstNI CCWGG 2 cut(s) 294, 714
BstNSI RCATGY 1 cut(s) 1330
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 3 cut(s) 292, 493, 712
BstSFI CTRYAG 2 cut(s) 475, 855
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 1 cut(s) 1379
BstX2I RGATCY 3 cut(s) 152, 721, 1027
BstYI RGATCY 3 cut(s) 152, 721, 1027
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 994, 1207
BtgI CCRYGG 1 cut(s) 1420
BtsCI GGATG 4 cut(s) 193, 331, 513, 1389
BtsIMutI CAGTG 4 cut(s) 354, 775, 1273, 1435
BveI ACCTGC 1 cut(s) 848
Cac8I GCNNGC 1 cut(s) 1377
CaiI CAGNNNCTG 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 449, 491
Csp6I GTAC 3 cut(s) 702, 942, 1294
CviAII CATG 6 cut(s) 197, 884, 1130, 1184, 1309, 1327
CviQI GTAC 3 cut(s) 702, 942, 1294
DdeI CTNAG 6 cut(s) 90, 129, 738, 911, 1092, 1290
DpnI GATC 7 cut(s) 154, 459, 483, 540, 723, 1029, 1282
DpnII GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
DraI TTTAAA 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 2 cut(s) 89, 200
Ecl136II GAGCTC 1 cut(s) 1410
Eco130I CCWWGG 2 cut(s) 345, 1403
Eco24I GRGCYC 1 cut(s) 1412
Eco31I GGTCTC 1 cut(s) 740
Eco47I GGWCC 2 cut(s) 449, 491
Eco53kI GAGCTC 1 cut(s) 1410
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 1410
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 2 cut(s) 292, 712
EcoT14I CCWWGG 2 cut(s) 345, 1403
EcoT38I GRGCYC 1 cut(s) 1412
ErhI CCWWGG 2 cut(s) 345, 1403
FaeI CATG 6 cut(s) 200, 887, 1133, 1187, 1312, 1330
FalI AAGNNNNNCTT 2 cut(s) 982, 1014
FaqI GGGAC 2 cut(s) 1250, 1368
FatI CATG 6 cut(s) 196, 883, 1129, 1183, 1308, 1326
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 3 cut(s) 48, 995, 1368
FokI GGATG 4 cut(s) 200, 338, 520, 1376
FriOI GRGCYC 1 cut(s) 1412
Fsp4HI GCNGC 3 cut(s) 48, 995, 1368
FspBI CTAG 3 cut(s) 41, 83, 726
GluI GCNGC 3 cut(s) 48, 995, 1368
GsaI CCCAGC 1 cut(s) 700
GsuI CTGGAG 4 cut(s) 315, 378, 735, 1233
HaeIII GGCC 2 cut(s) 994, 1207
HapII CCGG 4 cut(s) 150, 494, 1064, 1204
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 200, 887, 1133, 1187, 1312, 1330
HincII GTYRAC 1 cut(s) 1228
HindII GTYRAC 1 cut(s) 1228
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 8 cut(s) 122, 283, 394, 614, 909, 1159, 1342, 1425
HpaII CCGG 4 cut(s) 150, 494, 1064, 1204
HphI GGTGA 5 cut(s) 71, 770, 853, 958, 1267
Hpy166II GTNNAC 1 cut(s) 1228
Hpy188I TCNGA 3 cut(s) 739, 1095, 1347
Hpy188III TCNNGA 8 cut(s) 505, 553, 573, 618, 1002, 1212, 1267, 1415
Hpy8I GTNNAC 1 cut(s) 1228
Hpy99I CGWCG 3 cut(s) 14, 119, 149
HpyAV CCTTC 7 cut(s) 87, 626, 744, 1008, 1061, 1172, 1218
HpyCH4III ACNGT 6 cut(s) 10, 488, 710, 770, 1277, 1421
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 8 cut(s) 533, 674, 683, 823, 857, 1322, 1332, 1375
HpyF10VI GCNNNNNNNGC 4 cut(s) 508, 671, 680, 1376
HpyF3I CTNAG 6 cut(s) 90, 129, 738, 911, 1092, 1290
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 200, 887, 1133, 1187, 1312, 1330
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
LmnI GCTCC 1 cut(s) 1407
Lsp1109I GCAGC 1 cut(s) 1379
LweI GCATC 3 cut(s) 498, 683, 1012
MaeI CTAG 3 cut(s) 41, 83, 726
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 59, 758, 1006
MalI GATC 7 cut(s) 154, 459, 483, 540, 723, 1029, 1282
MboI GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
MboII GAAGA 7 cut(s) 22, 88, 226, 283, 568, 698, 797
MflI RGATCY 3 cut(s) 152, 721, 1027
MhlI GDGCHC 2 cut(s) 504, 1412
MluCI AATT 5 cut(s) 169, 802, 836, 893, 982
MlyI GAGTC 1 cut(s) 903
MseI TTAA 5 cut(s) 369, 417, 653, 1193, 1245
MslI CAYNNNNRTG 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 4 cut(s) 150, 494, 1064, 1204
MspR9I CCNGG 3 cut(s) 294, 495, 714
Mva1269I GAATGC 2 cut(s) 685, 1143
MvaI CCWGG 2 cut(s) 294, 714
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 4 cut(s) 508, 671, 680, 1376
NciI CCSGG 1 cut(s) 495
NdeII GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
NlaIII CATG 6 cut(s) 200, 887, 1133, 1187, 1312, 1330
NlaIV GGNNCC 3 cut(s) 154, 723, 1062
NmuCI GTSAC 2 cut(s) 59, 758
NspI RCATGY 1 cut(s) 1330
OliI CACNNNNGTG 1 cut(s) 971
PciI ACATGT 1 cut(s) 1326
PctI GAATGC 2 cut(s) 685, 1143
PfeI GAWTC 7 cut(s) 122, 283, 394, 614, 1159, 1342, 1425
PflMI CCANNNNNTGG 2 cut(s) 293, 1404
PfoI TCCNGGA 2 cut(s) 493, 712
PkrI GCNGC 3 cut(s) 49, 996, 1369
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
PscI ACATGT 1 cut(s) 1326
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 1412
Psp6I CCWGG 2 cut(s) 292, 712
PspFI CCCAGC 1 cut(s) 696
PspGI CCWGG 2 cut(s) 292, 712
PspN4I GGNNCC 3 cut(s) 154, 723, 1062
PspPI GGNCC 2 cut(s) 449, 491
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 3 cut(s) 152, 721, 1027
RsaI GTAC 3 cut(s) 703, 943, 1295
RsaNI GTAC 3 cut(s) 702, 942, 1294
RseI CAYNNNNRTG 1 cut(s) 971
SacI GAGCTC 1 cut(s) 1412
SaqAI TTAA 5 cut(s) 369, 417, 653, 1193, 1245
SatI GCNGC 3 cut(s) 48, 995, 1368
Sau3AI GATC 7 cut(s) 152, 457, 481, 538, 721, 1027, 1280
Sau96I GGNCC 2 cut(s) 449, 491
SchI GAGTC 1 cut(s) 903
ScrFI CCNGG 3 cut(s) 294, 495, 714
SduI GDGCHC 2 cut(s) 504, 1412
SfaNI GCATC 3 cut(s) 498, 683, 1012
SfcI CTRYAG 2 cut(s) 475, 855
SinI GGWCC 2 cut(s) 449, 491
SmiMI CAYNNNNRTG 1 cut(s) 971
Sse9I AATT 5 cut(s) 169, 802, 836, 893, 982
SsiI CCGC 9 cut(s) 48, 100, 159, 185, 447, 995, 1025, 1187, 1220
SspI AATATT 2 cut(s) 241, 658
SspMI CTAG 3 cut(s) 41, 83, 726
SstI GAGCTC 1 cut(s) 1412
StyD4I CCNGG 3 cut(s) 292, 493, 712
StyI CCWWGG 2 cut(s) 345, 1403
TaaI ACNGT 6 cut(s) 10, 488, 710, 770, 1277, 1421
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 677, 1266, 1316
TasI AATT 5 cut(s) 169, 802, 836, 893, 982
TauI GCSGC 2 cut(s) 50, 997
TfiI GAWTC 7 cut(s) 122, 283, 394, 614, 1159, 1342, 1425
Tru1I TTAA 5 cut(s) 369, 417, 653, 1193, 1245
Tru9I TTAA 5 cut(s) 369, 417, 653, 1193, 1245
TscAI CASTG 4 cut(s) 361, 775, 1280, 1435
TseFI GTSAC 2 cut(s) 59, 758
TseI GCWGC 1 cut(s) 1367
Tsp45I GTSAC 2 cut(s) 59, 758
TspDTI ATGAA 4 cut(s) 378, 849, 972, 1118
TspGWI ACGGA 1 cut(s) 1311
TspRI CASTG 4 cut(s) 361, 775, 1280, 1435
Van91I CCANNNNNTGG 2 cut(s) 293, 1404
VpaK11BI GGWCC 2 cut(s) 449, 491
XapI RAATTY 2 cut(s) 893, 982
XceI RCATGY 1 cut(s) 1330
XspI CTAG 3 cut(s) 41, 83, 726
ZraI GACGTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.