Rorug06G0380700

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009785
Physical Location & Seq
Forward (+)
52664143 .. 52664439
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0380700.1

Sequence Viewer

Length: 297 bp
ATGAGAAACAAGAGTGAAAGAAGAGGGGAGAGCTCAGACATGGTATTGAAGCTGCAGATGAATACAGGTACAACTAGCAAGGATGGAGTTATCTGGGCCGAACCCAGGACCATCAAGAAGGCTACCGGTAGTGTTTTCCCGGCGAAGAGAAGGTTGGTGAAGACCATGGTTTTTGCTTCCGTTTTGCACTTCTTCGCCTCCATTTTATGTTCCTCTGGAGAAGGTGGTGGGAGGAAACGAGATATCCGAACTGCCAAAAAATTCAAGCAGGTAGTTCCACTTCAATATTACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

98

Amino Acids

11.04

Weight (kDa)

10.65

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25940 AT4G32940
fragaria_vesca FvH4_2g32190 FvH4_2g32190 FvH4_2g32190 FvH4_2g32190
malus_domestica MD08G1073500.v1.1
prunus_persica Prupe.1G415000_v2.0.a1 Prupe.1G415000_v2.0.a1
pyrus_communis pycom08g06090 pycom15g05790
rosa_chinensis RchiOBHm_Chr6g0310481
rosa_laevigata RLG00000010479
rosa_multiflora Rmu_sc0035020.1_g000006
rosa_roxburghii Rroxscaffold_7G00158490
rosa_rugosa Rorug06G0380700
rosa_samantha Rh6AG494700 Rh6BG504400 Rh6CG509600 Rh6DG495600
rosa_wichuraiana Rw6G043030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 125
AgsI TTSAA 3 cut(s) 49, 265, 284
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 33, 52
AluI AGCT 2 cut(s) 33, 52
Alw21I GWGCWC 1 cut(s) 35
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 260
AsiGI ACCGGT 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 96, 108
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbsI GAAGAC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 77, 119
BciT130I CCWGG 1 cut(s) 106
BcnI CCSGG 1 cut(s) 140
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 106, 140
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 96, 108
BmrFI CCNGG 2 cut(s) 106, 140
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 104, 165
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 104, 165
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 1 cut(s) 98
BshTI ACCGGT 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 35
BsiSI CCGG 2 cut(s) 126, 140
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 125
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 104, 165
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 16, 140
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 88
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 104, 138
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 88
BveI ACCTGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 96, 108
Csp6I GTAC 1 cut(s) 69
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 2 cut(s) 40, 166
CviJI RGCY 4 cut(s) 33, 52, 98, 122
CviKI_1 RGCY 4 cut(s) 33, 52, 98, 122
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 16, 140
EarI CTCTTC 2 cut(s) 16, 140
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 33
EcoICRI GAGCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 43, 169
FaiI YATR 3 cut(s) 41, 167, 208
FatI CATG 2 cut(s) 39, 165
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 126, 140
Hin1II CATG 2 cut(s) 43, 169
HpaII CCGG 2 cut(s) 126, 140
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 2 cut(s) 37, 248
Hpy188III TCNNGA 2 cut(s) 115, 216
HpyAV CCTTC 3 cut(s) 112, 144, 215
HpyCH4V TGCA 2 cut(s) 55, 187
HpyF3I CTNAG 1 cut(s) 34
Hsp92II CATG 2 cut(s) 43, 169
LpnPI CCDG 8 cut(s) 51, 79, 91, 118, 139, 153, 201, 254
Lsp1109I GCAGC 1 cut(s) 39
MaeI CTAG 1 cut(s) 75
MboII GAAGA 4 cut(s) 33, 157, 172, 184
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 17, 208, 223, 225
MspI CCGG 2 cut(s) 126, 140
MspR9I CCNGG 2 cut(s) 106, 140
MvaI CCWGG 1 cut(s) 106
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 43, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 2 cut(s) 96, 108
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 35
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 2 cut(s) 96, 108
ScrFI CCNGG 2 cut(s) 106, 140
SduI GDGCHC 1 cut(s) 35
SetI ASST 6 cut(s) 35, 54, 70, 155, 226, 273
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 108
Sse9I AATT 1 cut(s) 260
SspI AATATT 1 cut(s) 287
SspMI CTAG 1 cut(s) 75
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 2 cut(s) 104, 138
StyI CCWWGG 1 cut(s) 165
TasI AATT 1 cut(s) 260
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.