Rh6CG509600

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009785
Physical Location & Seq
Reverse (-)
66977221 .. 66981594
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG509600.1

Sequence Viewer

Length: 1416 bp
ATGTATCCCATATGGGACCCACGTATAAAAAAAAAAATCCCACGCGATTCACAACCAATAAATAAACAACAAACACTGCGACCTTCACCGAAACCCAGCTCCACCAATCAAAAATATCCTATCCCACTTTCGCCGGAAACCGCCATGACTCGGTTGGCCACCGTCATCGCCGTCCTTCTTTTCTTCCTAGTCTCCCTCTCTTCTTCCGCCACCAGTAGCCGCGACCTGATCGGAGACGTCTTGCGCTTGCCGTCAGAAGCTTCGAGGTTCTTCCGCGCCGGCGATGGTGGCGCCGATCAGCCAGACGACGGCTCCGTCGGCACGCGGTGGGCCGTTTTGATCGCCGGCTCCAATGGATACTGGAATTACAGGCATCAGGCTGATATATGCCATGCCTATCAATTATTGAAGCAAGGAGGGCTGAAAGATGAAAATATTGTTGTATTTATGTATGATGATATTGCTTTCAATGAAGAGAACCCTAGGCAAGGAGTCATCATCAACAGTCCTCATGGTGATGATGTTTATAAAGGAGTCCCGAAGGATTACACTGGGGATGATGTTACTGTTAATAATTTCTTTGCTGCTATTCTTGGAAACAAAACTGCTATTACCGGGGGTAGTGGGAAAGTTGTGGACAGTGGTCCGAATGATCACATCTTCATATACTACTCCGATCATGGTGGTCCTGGAGTACTTGGGATGCCTACCAGTCCCTATATTTATGCAGACAGGCTCATAGAAGTTCTAAAGAAGAAGCATGCTGCAGGGACATATGAAAGTTTGGTATTTTATCTTGAAGCTTGTGAATCCGGAAGTATCTTTGAGGGTCTTCTTCCTGAAGGTTTGAATATCTTTGCAACTACAGCATCAAATGCAGAAGAGAGCAGTTGGGGGACTTACTGCCCGGGAGAGTATCCTAGTCCTCCCCCAGAATATGAAACCTGTTTGGGTGACTTGTATAGTGTTGCTTGGATGGAAGATAGTGACGTACACAACTTGAAGTCAGAAACTTTGCACCAGCAGTATGAACTGGTCAAATCAAGGACAGCGAGTGATAATTCTGCTTATGGTTCTCATGTCATGCAATATGGCGACATAGGGCTCAGCAAGAACAACCTCTTCATGTATATGGGGACAAATCCTGCAAATGATAACTACACTTTCATGCCTCAGAACTTCTTCAGGCCATCTTCAAAAGCTGTCAACCAGAGGGATGCTGATCTGGTCCATTTCTGGGATAAGGTTTATATCTCATATCTCTTTCTTTTTATATTACTTTTCTGTTGGTTTTGCTTAAATTTATGTTTAGTCATCCCTTTGCATACTTATAGTTGGGAAGTTTGTCATTTTATTAGACATTTTGAATCTTTGATCGATATGATGATATCAGCAATGATGAAGGGGAATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

471

Amino Acids

52.71

Weight (kDa)

5.3

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 109 - 380 8.1e-118 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25940 AT4G32940
fragaria_vesca FvH4_2g32190 FvH4_2g32190 FvH4_2g32190 FvH4_2g32190
malus_domestica MD08G1073500.v1.1
prunus_persica Prupe.1G415000_v2.0.a1 Prupe.1G415000_v2.0.a1
pyrus_communis pycom08g06090 pycom15g05790
rosa_chinensis RchiOBHm_Chr6g0310481
rosa_laevigata RLG00000010479
rosa_multiflora Rmu_sc0035020.1_g000006
rosa_roxburghii Rroxscaffold_7G00158490
rosa_rugosa Rorug06G0380700
rosa_samantha Rh6AG494700 Rh6BG504400 Rh6CG509600 Rh6DG495600
rosa_wichuraiana Rw6G043030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AasI GACNNNNNNGTC 1 cut(s) 314
AatII GACGTC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 290
AccII CGCG 4 cut(s) 45, 222, 276, 325
AccIII TCCGGA 1 cut(s) 812
AciI CCGC 5 cut(s) 141, 207, 220, 274, 325
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 1300
AcuI CTGAAG 2 cut(s) 861, 1168
AcyI GRCGYC 2 cut(s) 237, 291
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 2 cut(s) 696, 993
AfiI CCNNNNNNNGG 4 cut(s) 150, 308, 488, 1237
AgsI TTSAA 7 cut(s) 409, 469, 800, 850, 1003, 1197, 1367
AjnI CCWGG 1 cut(s) 688
AluBI AGCT 4 cut(s) 99, 260, 803, 1202
AluI AGCT 4 cut(s) 99, 260, 803, 1202
Alw26I GTCTC 2 cut(s) 196, 228
Ama87I CYCGRG 1 cut(s) 907
Aor13HI TCCGGA 1 cut(s) 812
AoxI GGCC 3 cut(s) 156, 330, 1187
ApeKI GCWGC 2 cut(s) 584, 764
ApoI RAATTY 1 cut(s) 1300
Asp700I GAANNNNTTC 1 cut(s) 1181
AspA2I CCTAGG 1 cut(s) 482
AspLEI GCGC 3 cut(s) 246, 278, 293
AspS9I GGNCC 5 cut(s) 16, 330, 644, 686, 1228
AsuC2I CCSGG 3 cut(s) 616, 908, 909
AsuHPI GGTGA 3 cut(s) 78, 527, 965
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 4 cut(s) 16, 644, 686, 1228
AvrII CCTAGG 1 cut(s) 482
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 571, 751
BccI CCATC 3 cut(s) 278, 970, 1198
BceAI ACGGC 4 cut(s) 155, 235, 317, 325
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 3 cut(s) 15, 350, 927
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 3 cut(s) 616, 908, 909
BcoDI GTCTC 2 cut(s) 196, 228
BfaI CTAG 3 cut(s) 188, 483, 921
BfmI CTRYAG 2 cut(s) 765, 864
BfoI RGCGCY 1 cut(s) 294
BfuI GTATCC 3 cut(s) 15, 350, 927
BisI GCNGC 3 cut(s) 220, 585, 765
BlnI CCTAGG 1 cut(s) 482
BlpI GCTNAGC 1 cut(s) 1106
BlsI GCNGC 3 cut(s) 221, 586, 766
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 4 cut(s) 616, 690, 908, 909
Bme18I GGWCC 4 cut(s) 16, 644, 686, 1228
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 5 cut(s) 16, 330, 644, 686, 1228
BmiI GGNNCC 5 cut(s) 17, 18, 292, 313, 349
BmrFI CCNGG 4 cut(s) 616, 690, 908, 909
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 4 cut(s) 382, 693, 878, 1207
BmuI ACTGGG 1 cut(s) 561
BoxI GACNNNNGTC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 824
BpmI CTGGAG 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 1106
BpuMI CCSGG 3 cut(s) 616, 908, 909
Bsa29I ATCGAT 1 cut(s) 1377
BsaAI YACGTR 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 1221
BsaHI GRCGYC 2 cut(s) 237, 291
BsaJI CCNNGG 3 cut(s) 482, 615, 907
BsaWI WCCGGW 1 cut(s) 812
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 308, 488, 1237
Bse118I RCCGGY 2 cut(s) 278, 344
Bse1I ACTGG 5 cut(s) 213, 365, 556, 711, 1038
Bse3DI GCAATG 1 cut(s) 1401
Bse8I GATNNNNATC 1 cut(s) 1221
BseAI TCCGGA 1 cut(s) 812
BseBI CCWGG 1 cut(s) 690
BseCI ATCGAT 1 cut(s) 1377
BseDI CCNNGG 3 cut(s) 482, 615, 907
BseGI GGATG 5 cut(s) 562, 708, 981, 1222, 1314
BseJI GATNNNNATC 1 cut(s) 1221
BseLI CCNNNNNNNGG 4 cut(s) 150, 308, 488, 1237
BseMI GCAATG 1 cut(s) 1401
BseMII CTCAG 2 cut(s) 1120, 1187
BseNI ACTGG 5 cut(s) 213, 365, 556, 711, 1038
BseXI GCAGC 2 cut(s) 571, 751
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 4 cut(s) 45, 222, 276, 325
BshFI GGCC 3 cut(s) 158, 332, 1189
BshNI GGYRCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 1377
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 6 cut(s) 134, 279, 345, 615, 813, 908
BslFI GGGAC 6 cut(s) 29, 521, 699, 784, 910, 1150
BslI CCNNNNNNNGG 4 cut(s) 150, 308, 488, 1237
BsmAI GTCTC 2 cut(s) 196, 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 6 cut(s) 29, 521, 699, 784, 910, 1150
BsnI GGCC 3 cut(s) 158, 332, 1189
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp13I TCCGGA 1 cut(s) 812
Bsp143I GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
Bsp1720I GCTNAGC 1 cut(s) 1106
BspACI CCGC 5 cut(s) 141, 207, 220, 274, 325
BspANI GGCC 3 cut(s) 158, 332, 1189
BspCNI CTCAG 2 cut(s) 1119, 1186
BspDI ATCGAT 1 cut(s) 1377
BspEI TCCGGA 1 cut(s) 812
BspFNI CGCG 4 cut(s) 45, 222, 276, 325
BspLI GGNNCC 5 cut(s) 17, 18, 292, 313, 349
BspMAI CTGCAG 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 1401
BsrFI RCCGGY 2 cut(s) 278, 344
BsrI ACTGG 5 cut(s) 213, 365, 556, 711, 1038
BssAI RCCGGY 2 cut(s) 278, 344
BssECI CCNNGG 3 cut(s) 482, 615, 907
BssMI GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
BssNI GRCGYC 2 cut(s) 237, 291
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 4 cut(s) 163, 506, 568, 641
Bst6I CTCTTC 4 cut(s) 205, 468, 876, 1127
BstACI GRCGYC 2 cut(s) 237, 291
BstAPI GCANNNNNTGC 1 cut(s) 875
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 5 cut(s) 248, 280, 323, 346, 762
BstDEI CTNAG 2 cut(s) 1106, 1173
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 5 cut(s) 562, 708, 981, 1222, 1314
BstFNI CGCG 4 cut(s) 45, 222, 276, 325
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 3 cut(s) 246, 278, 293
BstKTI GATC 7 cut(s) 231, 298, 342, 655, 679, 1225, 1377
BstMAI GTCTC 2 cut(s) 196, 228
BstMBI GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
BstMWI GCNNNNNNNGC 5 cut(s) 288, 318, 418, 866, 875
BstNI CCWGG 1 cut(s) 690
BstNSI RCATGY 1 cut(s) 764
BstPAI GACNNNNGTC 1 cut(s) 642
BstSCI CCNGG 4 cut(s) 614, 688, 906, 907
BstSFI CTRYAG 2 cut(s) 765, 864
BstUI CGCG 4 cut(s) 45, 222, 276, 325
BstV1I GCAGC 2 cut(s) 571, 751
BstV2I GAAGAC 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 1377
BsuI GTATCC 3 cut(s) 15, 350, 927
BsuRI GGCC 3 cut(s) 158, 332, 1189
BsuTUI ATCGAT 1 cut(s) 1377
BtgZI GCGATG 2 cut(s) 151, 297
BtsCI GGATG 5 cut(s) 562, 708, 981, 1222, 1314
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 3 cut(s) 74, 549, 646
Cac8I GCNNGC 5 cut(s) 248, 280, 323, 346, 762
CfoI GCGC 3 cut(s) 246, 278, 293
Cfr10I RCCGGY 2 cut(s) 278, 344
Cfr13I GGNCC 5 cut(s) 16, 330, 644, 686, 1228
Cfr9I CCCGGG 1 cut(s) 907
ClaI ATCGAT 1 cut(s) 1377
Csp6I GTAC 2 cut(s) 695, 992
CviAII CATG 9 cut(s) 145, 392, 512, 680, 761, 1079, 1084, 1126, 1168
CviQI GTAC 2 cut(s) 695, 992
DdeI CTNAG 2 cut(s) 1106, 1173
DinI GGCGCC 1 cut(s) 292
DpnI GATC 7 cut(s) 230, 297, 341, 654, 678, 1224, 1376
DpnII GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
DraIII CACNNNGTG 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 4 cut(s) 205, 468, 876, 1127
EarI CTCTTC 4 cut(s) 205, 468, 876, 1127
EciI GGCGGA 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 1107
Eco32I GATATC 1 cut(s) 1389
Eco47I GGWCC 4 cut(s) 16, 644, 686, 1228
Eco57I CTGAAG 2 cut(s) 861, 1168
Eco88I CYCGRG 1 cut(s) 907
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 688
EcoRV GATATC 1 cut(s) 1389
EcoT14I CCWWGG 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 1107
EgeI GGCGCC 1 cut(s) 292
EheI GGCGCC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 482
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 9 cut(s) 148, 395, 515, 683, 764, 1082, 1087, 1129, 1171
FaqI GGGAC 6 cut(s) 29, 521, 699, 784, 910, 1150
FatI CATG 9 cut(s) 144, 391, 511, 679, 760, 1078, 1083, 1125, 1167
FauNDI CATATG 2 cut(s) 11, 775
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 3 cut(s) 220, 585, 765
FokI GGATG 5 cut(s) 569, 715, 988, 1229, 1301
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 3 cut(s) 220, 585, 765
FspBI CTAG 3 cut(s) 188, 483, 921
GlaI GCGC 3 cut(s) 245, 277, 292
GluI GCNGC 3 cut(s) 220, 585, 765
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 158, 332, 1189
HapII CCGG 6 cut(s) 134, 279, 345, 615, 813, 908
HhaI GCGC 3 cut(s) 246, 278, 293
Hin1I GRCGYC 2 cut(s) 237, 291
Hin1II CATG 9 cut(s) 148, 395, 515, 683, 764, 1082, 1087, 1129, 1171
Hin6I GCGC 3 cut(s) 244, 276, 291
HinP1I GCGC 3 cut(s) 244, 276, 291
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HindIII AAGCTT 2 cut(s) 258, 801
HinfI GANTC 6 cut(s) 47, 148, 492, 534, 809, 1367
HpaII CCGG 6 cut(s) 134, 279, 345, 615, 813, 908
HphI GGTGA 3 cut(s) 78, 527, 965
Hpy166II GTNNAC 3 cut(s) 637, 994, 1207
Hpy188I TCNGA 6 cut(s) 233, 256, 648, 676, 1009, 1176
Hpy188III TCNNGA 4 cut(s) 538, 797, 813, 839
Hpy8I GTNNAC 3 cut(s) 637, 994, 1207
Hpy99I CGWCG 2 cut(s) 311, 320
HpyAV CCTTC 5 cut(s) 93, 185, 535, 836, 1396
HpyCH4III ACNGT 4 cut(s) 163, 506, 568, 641
HpyCH4IV ACGT 3 cut(s) 22, 237, 990
HpyCH4V TGCA 8 cut(s) 728, 767, 860, 878, 1018, 1087, 1148, 1324
HpyF10VI GCNNNNNNNGC 5 cut(s) 288, 318, 418, 866, 875
HpyF3I CTNAG 2 cut(s) 1106, 1173
HpySE526I ACGT 3 cut(s) 22, 237, 990
Hsp92I GRCGYC 2 cut(s) 237, 291
Hsp92II CATG 9 cut(s) 148, 395, 515, 683, 764, 1082, 1087, 1129, 1171
HspAI GCGC 3 cut(s) 244, 276, 291
KasI GGCGCC 1 cut(s) 290
KflI GGGWCCC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 812
KroI GCCGGC 2 cut(s) 278, 344
KroNI GCCGGC 2 cut(s) 280, 346
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
LmnI GCTCC 3 cut(s) 104, 317, 353
Lsp1109I GCAGC 2 cut(s) 571, 751
LweI GCATC 4 cut(s) 382, 693, 878, 1207
MaeI CTAG 3 cut(s) 188, 483, 921
MaeII ACGT 3 cut(s) 22, 237, 990
MaeIII GTNAC 3 cut(s) 562, 953, 986
MalI GATC 7 cut(s) 230, 297, 341, 654, 678, 1224, 1376
MboI GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
MhlI GDGCHC 1 cut(s) 1107
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 5 cut(s) 364, 401, 574, 1060, 1300
MluNI TGGCCA 1 cut(s) 158
Mly113I GGCGCC 1 cut(s) 291
MlyI GAGTC 3 cut(s) 142, 501, 543
MnlI CCTC 9 cut(s) 206, 258, 410, 519, 820, 936, 1130, 1182, 1206
Mox20I TGGCCA 1 cut(s) 158
MreI CGCCGGCG 1 cut(s) 278
MroI TCCGGA 1 cut(s) 812
MroNI GCCGGC 2 cut(s) 278, 344
MroXI GAANNNNTTC 1 cut(s) 1181
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 570, 1298
MslI CAYNNNNRTG 3 cut(s) 516, 1130, 1166
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 6 cut(s) 134, 279, 345, 615, 813, 908
MspR9I CCNGG 4 cut(s) 616, 690, 908, 909
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 4 cut(s) 45, 222, 276, 325
MwoI GCNNNNNNNGC 5 cut(s) 288, 318, 418, 866, 875
NaeI GCCGGC 2 cut(s) 280, 346
NarI GGCGCC 1 cut(s) 291
NciI CCSGG 3 cut(s) 616, 908, 909
NdeI CATATG 2 cut(s) 11, 775
NdeII GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
NgoMIV GCCGGC 2 cut(s) 278, 344
NlaIII CATG 9 cut(s) 148, 395, 515, 683, 764, 1082, 1087, 1129, 1171
NlaIV GGNNCC 5 cut(s) 17, 18, 292, 313, 349
NmuCI GTSAC 2 cut(s) 953, 986
NspI RCATGY 1 cut(s) 764
PaeI GCATGC 1 cut(s) 764
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 2 cut(s) 280, 346
PdmI GAANNNNTTC 1 cut(s) 1181
PfeI GAWTC 3 cut(s) 47, 809, 1367
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 3 cut(s) 221, 586, 766
PleI GAGTC 3 cut(s) 142, 500, 542
PluTI GGCGCC 1 cut(s) 294
PpsI GAGTC 3 cut(s) 142, 500, 542
Ppu21I YACGTR 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 16
PshAI GACNNNNGTC 1 cut(s) 642
PsiI TTATAA 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 688
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 5 cut(s) 17, 18, 292, 313, 349
PspPI GGNCC 5 cut(s) 16, 330, 644, 686, 1228
PspPPI RGGWCCY 1 cut(s) 16
PstI CTGCAG 1 cut(s) 769
RsaI GTAC 2 cut(s) 696, 993
RsaNI GTAC 2 cut(s) 695, 992
RseI CAYNNNNRTG 3 cut(s) 516, 1130, 1166
SaqAI TTAA 2 cut(s) 570, 1298
SatI GCNGC 3 cut(s) 220, 585, 765
Sau3AI GATC 7 cut(s) 228, 295, 339, 652, 676, 1222, 1374
Sau96I GGNCC 5 cut(s) 16, 330, 644, 686, 1228
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 3 cut(s) 142, 501, 543
ScrFI CCNGG 4 cut(s) 616, 690, 908, 909
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 4 cut(s) 382, 693, 878, 1207
SfcI CTRYAG 2 cut(s) 765, 864
SfoI GGCGCC 1 cut(s) 292
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 4 cut(s) 16, 644, 686, 1228
SmaI CCCGGG 1 cut(s) 909
SmiMI CAYNNNNRTG 3 cut(s) 516, 1130, 1166
SphI GCATGC 1 cut(s) 764
Sse9I AATT 5 cut(s) 364, 401, 574, 1060, 1300
SsiI CCGC 5 cut(s) 141, 207, 220, 274, 325
SspDI GGCGCC 1 cut(s) 290
SspI AATATT 1 cut(s) 436
SspMI CTAG 3 cut(s) 188, 483, 921
StyD4I CCNGG 4 cut(s) 614, 688, 906, 907
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 4 cut(s) 163, 506, 568, 641
TaiI ACGT 3 cut(s) 25, 240, 993
TaqI TCGA 2 cut(s) 263, 1377
TasI AATT 5 cut(s) 364, 401, 574, 1060, 1300
TatI WGTACW 1 cut(s) 694
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 3 cut(s) 47, 809, 1367
Tru1I TTAA 2 cut(s) 570, 1298
Tru9I TTAA 2 cut(s) 570, 1298
TscAI CASTG 3 cut(s) 81, 556, 646
TseFI GTSAC 2 cut(s) 953, 986
TseI GCWGC 2 cut(s) 584, 764
Tsp45I GTSAC 2 cut(s) 953, 986
TspDTI ATGAA 9 cut(s) 444, 486, 652, 792, 954, 1044, 1114, 1156, 1415
TspGWI ACGGA 1 cut(s) 304
TspMI CCCGGG 1 cut(s) 907
TspRI CASTG 3 cut(s) 81, 556, 646
VpaK11BI GGWCC 4 cut(s) 16, 644, 686, 1228
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 1 cut(s) 1300
XceI RCATGY 1 cut(s) 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 907
XmaJI CCTAGG 1 cut(s) 482
XmnI GAANNNNTTC 1 cut(s) 1181
XspI CTAG 3 cut(s) 188, 483, 921
ZraI GACGTC 1 cut(s) 238
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.