AT4G32940

Vacuolar-processing enzyme

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15900270 .. 15903523
3254 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32940.1

Sequence Viewer

Length: 1485 bp
ATGGCCACAACGATGACACGTGTCTCCGTCGGCGTCGTCCTCTTTGTTCTCTTAGTCTCGCTGGTTGCCGTCTCCGCCGCGAGAAGCGGTCCTGATGATGTTATCAAACTCCCTTCGCAGGCTTCTCGCTTCTTCCGTCCTGCTGAAAACGACGACGATTCTAACTCCGGTACTAGGTGGGCTGTTCTAGTCGCCGGATCTAGCGGATATTGGAATTACAGGCATCAGGCTGATATATGCCATGCCTATCAACTTCTGAGGAAAGGTGGATTGAAAGAGGAGAATATTGTGGTATTCATGTATGATGATATTGCTAACAATTACGAGAATCCAAGGCCTGGAACCATTATCAACAGCCCTCATGGAAAAGATGTCTATCAAGGAGTTCCCAAGGATTATACTGGAGATGATGTCAATGTTGATAATCTATTTGCTGTGATCCTTGGAGACAAAACTGCTGTTAAAGGGGGAAGTGGGAAGGTTGTGGATAGTGGTCCTAATGATCATATCTTCATATTCTACAGTGACCATGGTGGTCCTGGAGTTCTTGGGATGCCAACTTCTCCTTACCTATATGCAAATGATCTCAATGATGTCTTGAAGAAGAAACATGCTTTAGGAACATATAAAAGCTTGGTGTTTTATCTCGAAGCTTGCGAATCTGGAAGTATCTTTGAAGGGCTTCTTCCTGAGGGTTTGAACATCTATGCCACAACTGCATCAAACGCCGAAGAAAGCAGTTGGGGTACCTATTGCCCTGGAGAGGAACCCAGTCCTCCACCGGAGTATGAAACTTGTTTAGGTGACTTGTACAGTGTTGCTTGGATGGAAGATAGTGGTATGCACAATTTACAGACTGAGACTCTGCACCAGCAATATGAACTTGTGAAAAGGAGGACTGCACCTGTTGGGTACTCTTATGGTTCTCATGTCATGCAATATGGCGATGTAGGAATTAGCAAGGATAATCTCGATCTTTATATGGGAACAAACCCTGCCAATGACAATTTTACCTTTGCGGATGCGAATTCACTAAAGCCACCTTCAAGAGTTACAAACCAGCGTGATGCAGATCTTGTTCATTTTTGGGAAAAGTACCGAAAAGCACCAGAAGGTTCAGCAAGAAAAACAGAAGCTCAGAAGCAAGTACTTGAAGCCATGTCTCACAGACTTCATATTGACAATAGCGTGATACTCGTCGGAAAAATCTTGTTTGGCATTTCGAGAGGTCCTGAAGTGCTAAACAAAGTACGGTCTGCTGGGCAACCTCTAGTCGATGACTGGAACTGCCTTAAAAATCAGGTGAGAGCTTTCGAGAGGCACTGTGGATCGCTGTCTCAGTACGGTATCAAGCACATGAGGTCTTTTGCAAACATCTGCAATGCAGGGATTCAAATGGAGCAAATGGAGGAGGCAGCTTCACAGGCTTGTACCACACTGCCAACTGGTCCTTGGAGCTCGCTTAACCGTGGATTCAGTGCATAG

Protein Analysis

494

Amino Acids

54.34

Weight (kDa)

5.55

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 59 - 330 3.1e-118 Peptidase C13 family
Legum_prodom PF20985 381 - 477 1.8e-40 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009785)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 746
AccB7I CCANNNNNTGG 1 cut(s) 338
AccII CGCG 1 cut(s) 80
AciI CCGC 5 cut(s) 75, 78, 87, 204, 1019
AclWI GGATC 3 cut(s) 205, 433, 1336
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1027
AcuI CTGAAG 1 cut(s) 1254
AcvI CACGTG 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 9 cut(s) 172, 748, 812, 914, 1097, 1149, 1251, 1343, 1432
AfiI CCNNNNNNNGG 4 cut(s) 118, 174, 338, 763
AflIII ACRYGT 2 cut(s) 17, 19
AgsI TTSAA 7 cut(s) 274, 601, 677, 700, 1047, 1154, 1394
AjnI CCWGG 3 cut(s) 337, 538, 757
AluBI AGCT 6 cut(s) 633, 653, 1136, 1310, 1418, 1458
AluI AGCT 6 cut(s) 633, 653, 1136, 1310, 1418, 1458
Alw21I GWGCWC 1 cut(s) 1460
Alw26I GTCTC 7 cut(s) 28, 61, 76, 441, 854, 1167, 1341
AlwI GGATC 3 cut(s) 205, 433, 1336
AoxI GGCC 2 cut(s) 3, 335
ApeKI GCWGC 1 cut(s) 1415
ApoI RAATTY 1 cut(s) 1027
Asp700I GAANNNNTTC 1 cut(s) 681
Asp718I GGTACC 1 cut(s) 746
AspS9I GGNCC 5 cut(s) 89, 494, 536, 1229, 1448
AsuHPI GGTGA 2 cut(s) 815, 1315
AvaII GGWCC 5 cut(s) 89, 494, 536, 1229, 1448
AxyI CCTNAGG 1 cut(s) 690
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 746
BanII GRGCYC 1 cut(s) 1460
BbrPI CACGTG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 1460
BbvI GCAGC 1 cut(s) 1427
BccI CCATC 1 cut(s) 820
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 3 cut(s) 339, 540, 759
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 7 cut(s) 28, 61, 76, 441, 854, 1167, 1341
BfaI CTAG 4 cut(s) 174, 188, 201, 1271
BfmI CTRYAG 1 cut(s) 520
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 2 cut(s) 78, 1416
BlsI GCNGC 2 cut(s) 79, 1417
BmcAI AGTACT 1 cut(s) 1149
Bme1390I CCNGG 3 cut(s) 339, 540, 759
Bme18I GGWCC 5 cut(s) 89, 494, 536, 1229, 1448
BmgT120I GGNCC 5 cut(s) 89, 494, 536, 1229, 1448
BmiI GGNNCC 3 cut(s) 343, 748, 768
BmrFI CCNGG 3 cut(s) 339, 540, 759
BmrI ACTGGG 1 cut(s) 765
BmsI GCATC 5 cut(s) 232, 543, 728, 1012, 1057
BmuI ACTGGG 1 cut(s) 765
BoxI GACNNNNGTC 1 cut(s) 20
BpmI CTGGAG 3 cut(s) 423, 561, 780
BsaAI YACGTR 1 cut(s) 20
BsaBI GATNNNNATC 2 cut(s) 375, 1071
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 7 cut(s) 332, 390, 442, 529, 757, 1451, 1468
BsaWI WCCGGW 2 cut(s) 167, 781
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 174, 338, 763
Bse1I ACTGG 4 cut(s) 406, 771, 1286, 1450
Bse21I CCTNAGG 1 cut(s) 690
Bse3DI GCAATG 1 cut(s) 1387
Bse8I GATNNNNATC 2 cut(s) 375, 1071
BseBI CCWGG 3 cut(s) 339, 540, 759
BseDI CCNNGG 7 cut(s) 332, 390, 442, 529, 757, 1451, 1468
BseGI GGATG 3 cut(s) 558, 831, 1027
BseJI GATNNNNATC 2 cut(s) 375, 1071
BseLI CCNNNNNNNGG 4 cut(s) 118, 174, 338, 763
BseMI GCAATG 1 cut(s) 1387
BseMII CTCAG 5 cut(s) 248, 681, 849, 1151, 1352
BseNI ACTGG 4 cut(s) 406, 771, 1286, 1450
BseRI GAGGAG 2 cut(s) 293, 1424
BseXI GCAGC 1 cut(s) 1427
BseYI CCCAGC 1 cut(s) 1259
BsgI GTGCAG 2 cut(s) 851, 885
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 5, 337
BshNI GGYRCC 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 1460
BsiSI CCGG 3 cut(s) 168, 195, 782
BslI CCNNNNNNNGG 4 cut(s) 118, 174, 338, 763
BsmAI GTCTC 7 cut(s) 28, 61, 76, 441, 854, 1167, 1341
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 5, 337
Bsp1286I GDGCHC 1 cut(s) 1460
Bsp1407I TGTACA 1 cut(s) 810
Bsp143I GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
Bsp19I CCATGG 1 cut(s) 529
BspACI CCGC 5 cut(s) 75, 78, 87, 204, 1019
BspANI GGCC 2 cut(s) 5, 337
BspCNI CTCAG 5 cut(s) 249, 682, 850, 1150, 1351
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 343, 748, 768
BspPI GGATC 3 cut(s) 205, 433, 1336
BspT107I GGYRCC 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 1387
BsrGI TGTACA 1 cut(s) 810
BsrI ACTGG 4 cut(s) 406, 771, 1286, 1450
BssECI CCNNGG 7 cut(s) 332, 390, 442, 529, 757, 1451, 1468
BssMI GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 5 cut(s) 332, 390, 442, 529, 1451
Bst2UI CCWGG 3 cut(s) 339, 540, 759
Bst4CI ACNGT 6 cut(s) 524, 815, 1254, 1325, 1346, 1469
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 810
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 120, 655, 1460
BstDEI CTNAG 6 cut(s) 52, 257, 690, 858, 1137, 1338
BstDSI CCRYGG 2 cut(s) 529, 1468
BstF5I GGATG 3 cut(s) 558, 831, 1027
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 7 cut(s) 200, 441, 505, 586, 976, 1075, 1331
BstMAI GTCTC 7 cut(s) 28, 61, 76, 441, 854, 1167, 1341
BstMBI GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
BstMWI GCNNNNNNNGC 4 cut(s) 74, 716, 725, 1424
BstNI CCWGG 3 cut(s) 339, 540, 759
BstNSI RCATGY 1 cut(s) 614
BstPAI GACNNNNGTC 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 337, 538, 757
BstSFI CTRYAG 1 cut(s) 520
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 1427
BstX2I RGATCY 2 cut(s) 197, 1072
BstYI RGATCY 2 cut(s) 197, 1072
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 2 cut(s) 5, 337
BtgI CCRYGG 2 cut(s) 529, 1468
BtgZI GCGATG 1 cut(s) 960
BtsCI GGATG 3 cut(s) 558, 831, 1027
BtsI GCAGTG 1 cut(s) 1436
BtsIMutI CAGTG 5 cut(s) 529, 820, 1321, 1436, 1483
Cac8I GCNNGC 3 cut(s) 120, 655, 1460
Cfr13I GGNCC 5 cut(s) 89, 494, 536, 1229, 1448
CseI GACGC 1 cut(s) 22
Csp6I GTAC 9 cut(s) 171, 747, 811, 913, 1096, 1148, 1250, 1342, 1431
CviAII CATG 9 cut(s) 242, 298, 362, 530, 611, 929, 934, 1159, 1357
CviQI GTAC 9 cut(s) 171, 747, 811, 913, 1096, 1148, 1250, 1342, 1431
DdeI CTNAG 6 cut(s) 52, 257, 690, 858, 1137, 1338
DpnI GATC 7 cut(s) 199, 440, 504, 585, 975, 1074, 1330
DpnII GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 1458
Eco130I CCWWGG 5 cut(s) 332, 390, 442, 529, 1451
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 1460
Eco47I GGWCC 5 cut(s) 89, 494, 536, 1229, 1448
Eco53kI GAGCTC 1 cut(s) 1458
Eco57I CTGAAG 1 cut(s) 1254
Eco72I CACGTG 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 690
EcoICRI GAGCTC 1 cut(s) 1458
EcoO109I RGGNCCY 1 cut(s) 1229
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 3 cut(s) 337, 538, 757
EcoT14I CCWWGG 5 cut(s) 332, 390, 442, 529, 1451
EcoT38I GRGCYC 1 cut(s) 1460
ErhI CCWWGG 5 cut(s) 332, 390, 442, 529, 1451
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 9 cut(s) 245, 301, 365, 533, 614, 932, 937, 1162, 1360
FalI AAGNNNNNCTT 2 cut(s) 669, 701
FatI CATG 9 cut(s) 241, 297, 361, 529, 610, 928, 933, 1158, 1356
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 2 cut(s) 78, 1416
FokI GGATG 3 cut(s) 565, 838, 1034
FriOI GRGCYC 1 cut(s) 1460
Fsp4HI GCNGC 2 cut(s) 78, 1416
FspBI CTAG 4 cut(s) 174, 188, 201, 1271
GluI GCNGC 2 cut(s) 78, 1416
GsaI CCCAGC 1 cut(s) 1263
GsuI CTGGAG 3 cut(s) 423, 561, 780
HaeIII GGCC 2 cut(s) 5, 337
HapII CCGG 3 cut(s) 168, 195, 782
HgaI GACGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 9 cut(s) 245, 301, 365, 533, 614, 932, 937, 1162, 1360
HindIII AAGCTT 2 cut(s) 631, 651
HinfI GANTC 6 cut(s) 158, 328, 659, 862, 1390, 1473
HpaII CCGG 3 cut(s) 168, 195, 782
HphI GGTGA 2 cut(s) 815, 1315
Hpy188I TCNGA 3 cut(s) 258, 1140, 1202
Hpy99I CGWCG 5 cut(s) 32, 38, 155, 158, 1202
HpyAV CCTTC 5 cut(s) 123, 472, 671, 1053, 1106
HpyCH4III ACNGT 6 cut(s) 524, 815, 1254, 1325, 1346, 1469
HpyCH4IV ACGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 716, 725, 1424
HpyF3I CTNAG 6 cut(s) 52, 257, 690, 858, 1137, 1338
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 9 cut(s) 245, 301, 365, 533, 614, 932, 937, 1162, 1360
KpnI GGTACC 1 cut(s) 750
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
LmnI GCTCC 2 cut(s) 1399, 1455
Lsp1109I GCAGC 1 cut(s) 1427
LweI GCATC 5 cut(s) 232, 543, 728, 1012, 1057
MaeI CTAG 4 cut(s) 174, 188, 201, 1271
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 3 cut(s) 524, 803, 1051
MalI GATC 7 cut(s) 199, 440, 504, 585, 975, 1074, 1330
MboI GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
MboII GAAGA 7 cut(s) 124, 502, 613, 616, 677, 743, 842
MflI RGATCY 2 cut(s) 197, 1072
MhlI GDGCHC 1 cut(s) 1460
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 214, 319, 847, 954, 1006, 1027
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 856
MmeI TCCRAC 1 cut(s) 1180
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 462, 1293, 1464
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 168, 195, 782
MspR9I CCNGG 3 cut(s) 339, 540, 759
MvaI CCWGG 3 cut(s) 339, 540, 759
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 4 cut(s) 74, 716, 725, 1424
NcoI CCATGG 1 cut(s) 529
NdeII GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
NlaIII CATG 9 cut(s) 245, 301, 365, 533, 614, 932, 937, 1162, 1360
NlaIV GGNNCC 3 cut(s) 343, 748, 768
NmuCI GTSAC 2 cut(s) 524, 803
NspI RCATGY 1 cut(s) 614
PceI AGGCCT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 133, 654
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 5 cut(s) 158, 328, 659, 1390, 1473
PflMI CCANNNNNTGG 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 538
PkrI GCNGC 2 cut(s) 79, 1417
PleI GAGTC 1 cut(s) 856
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 1 cut(s) 856
Ppu21I YACGTR 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 1229
PshAI GACNNNNGTC 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 1460
Psp5II RGGWCCY 1 cut(s) 1229
Psp6I CCWGG 3 cut(s) 337, 538, 757
PspCI CACGTG 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 1259
PspGI CCWGG 3 cut(s) 337, 538, 757
PspN4I GGNNCC 3 cut(s) 343, 748, 768
PspPI GGNCC 5 cut(s) 89, 494, 536, 1229, 1448
PspPPI RGGWCCY 1 cut(s) 1229
PsuI RGATCY 2 cut(s) 197, 1072
RsaI GTAC 9 cut(s) 172, 748, 812, 914, 1097, 1149, 1251, 1343, 1432
RsaNI GTAC 9 cut(s) 171, 747, 811, 913, 1096, 1148, 1250, 1342, 1431
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 1460
SaqAI TTAA 3 cut(s) 462, 1293, 1464
SatI GCNGC 2 cut(s) 78, 1416
Sau3AI GATC 7 cut(s) 197, 438, 502, 583, 973, 1072, 1328
Sau96I GGNCC 5 cut(s) 89, 494, 536, 1229, 1448
ScaI AGTACT 1 cut(s) 1149
SchI GAGTC 1 cut(s) 856
ScrFI CCNGG 3 cut(s) 339, 540, 759
SduI GDGCHC 1 cut(s) 1460
SfaNI GCATC 5 cut(s) 232, 543, 728, 1012, 1057
SfcI CTRYAG 1 cut(s) 520
SinI GGWCC 5 cut(s) 89, 494, 536, 1229, 1448
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 6 cut(s) 214, 319, 847, 954, 1006, 1027
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 5 cut(s) 75, 78, 87, 204, 1019
SspI AATATT 1 cut(s) 286
SspMI CTAG 4 cut(s) 174, 188, 201, 1271
SstI GAGCTC 1 cut(s) 1460
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 3 cut(s) 337, 538, 757
StyI CCWWGG 5 cut(s) 332, 390, 442, 529, 1451
TaaI ACNGT 6 cut(s) 524, 815, 1254, 1325, 1346, 1469
TaiI ACGT 1 cut(s) 22
TaqI TCGA 5 cut(s) 648, 972, 1223, 1275, 1314
TasI AATT 6 cut(s) 214, 319, 847, 954, 1006, 1027
TatI WGTACW 2 cut(s) 810, 1147
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 5 cut(s) 158, 328, 659, 1390, 1473
Tru1I TTAA 3 cut(s) 462, 1293, 1464
Tru9I TTAA 3 cut(s) 462, 1293, 1464
TscAI CASTG 5 cut(s) 529, 820, 1328, 1443, 1483
TseFI GTSAC 2 cut(s) 524, 803
TseI GCWGC 1 cut(s) 1415
Tsp45I GTSAC 2 cut(s) 524, 803
TspDTI ATGAA 6 cut(s) 286, 502, 804, 894, 1070, 1163
TspGWI ACGGA 2 cut(s) 16, 125
TspRI CASTG 5 cut(s) 529, 820, 1328, 1443, 1483
Van91I CCANNNNNTGG 1 cut(s) 338
VpaK11BI GGWCC 5 cut(s) 89, 494, 536, 1229, 1448
XapI RAATTY 1 cut(s) 1027
XceI RCATGY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 2 cut(s) 536, 1449
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 4 cut(s) 174, 188, 201, 1271
ZrmI AGTACT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.