AT2G26400

Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11231770 .. 11233388
1619 bp
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UTR
Exon/CDS
Intron
AT2G26400.1

Sequence Viewer

Length: 600 bp
ATGGGTGAAGCCGCTAAGGATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAGGATCAGAAACTTCCTCACCACAAGGATCCTAAGGAATTTGTATCTTTGGACAAACTTGCAGAGCTTGGAGTACTTTGCTGGAGACTTGATGCTGATAACTATGAAACCGATGAGGAATTGAAAAGGATCCGCGAATCTCGTGGTTACTCCTACATGGACTTATGTGAGGTGTGTCCAGAGAAGCTTCCAAACTATGAAGAAAAAGTAAAGATGTTTTTTGAAGAACATTTACATATTGATGAAGAGATCCGTTACTGCCTCGCAGGAAGTGGATACTTTGATGTGAGGGATCTCAATGATATTTGGATTAGAGTATGGGTAAAGAAGGGAGGTTTGATAGTCTTCCCTGCTGGAATATATCATCGCTTCACCGTGGACTCGGACAACTATATGAAGGCAATGCGTCTTTTCGTGGGTGGACCAGTGTGGACTGCTTATAATCGCCCACATGACCATCTTCCTGCAAGGAAAGCGTATATGAAAAAATTCTTGAAGGTGATTGGGGACCGTAACATAGACGCTTCAGCGTAA

Protein Analysis

199

Amino Acids

23.44

Weight (kDa)

5.43

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARD PF03079 14 - 168 4.7e-61 ARD/ARD' family
Cupin_2 PF07883 96 - 156 1.4e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 12, 199
AclWI GGATC 8 cut(s) 27, 78, 89, 102, 190, 203, 310, 366
AcsI RAATTY 2 cut(s) 104, 554
AcuI CTGAAG 2 cut(s) 48, 576
AfaI GTAC 2 cut(s) 50, 141
AgsI TTSAA 4 cut(s) 41, 190, 290, 562
AluBI AGCT 3 cut(s) 44, 133, 253
AluI AGCT 3 cut(s) 44, 133, 253
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 8 cut(s) 27, 78, 89, 102, 190, 203, 310, 366
ApoI RAATTY 2 cut(s) 104, 554
Asp700I GAANNNNTTC 2 cut(s) 36, 554
AspS9I GGNCC 2 cut(s) 488, 574
AsuHPI GGTGA 4 cut(s) 17, 77, 430, 577
AvaII GGWCC 2 cut(s) 488, 574
AxyI CCTNAGG 1 cut(s) 99
BamHI GGATCC 2 cut(s) 94, 195
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 403
BccI CCATC 1 cut(s) 531
BciVI GTATCC 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 145
BfuI GTATCC 1 cut(s) 335
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 141
Bme18I GGWCC 2 cut(s) 488, 574
BmgT120I GGNCC 2 cut(s) 488, 574
BmiI GGNNCC 3 cut(s) 96, 197, 575
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 403
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 441
Bse1I ACTGG 1 cut(s) 491
Bse21I CCTNAGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 441
BseMI GCAATG 1 cut(s) 474
BseNI ACTGG 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 587
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 587
Bsp143I GATC 6 cut(s) 19, 70, 94, 195, 315, 358
BspACI CCGC 2 cut(s) 12, 199
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 96, 197, 575
BspPI GGATC 8 cut(s) 27, 78, 89, 102, 190, 203, 310, 366
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 6 cut(s) 19, 70, 94, 195, 315, 358
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 442, 578
Bst6I CTCTTC 2 cut(s) 60, 306
BstDEI CTNAG 2 cut(s) 15, 99
BstDSI CCRYGG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 6 cut(s) 22, 73, 97, 198, 318, 361
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 6 cut(s) 19, 70, 94, 195, 315, 358
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstUI CGCG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 4 cut(s) 94, 195, 315, 358
BstYI RGATCY 4 cut(s) 94, 195, 315, 358
Bsu36I CCTNAGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 488, 574
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 49, 140
CviAII CATG 2 cut(s) 223, 518
CviJI RGCY 4 cut(s) 11, 44, 133, 253
CviKI_1 RGCY 4 cut(s) 11, 44, 133, 253
CviQI GTAC 2 cut(s) 49, 140
DdeI CTNAG 2 cut(s) 15, 99
DpnI GATC 6 cut(s) 21, 72, 96, 197, 317, 360
DpnII GATC 6 cut(s) 19, 70, 94, 195, 315, 358
Eam1104I CTCTTC 2 cut(s) 60, 306
EarI CTCTTC 2 cut(s) 60, 306
Eco47I GGWCC 2 cut(s) 488, 574
Eco57I CTGAAG 2 cut(s) 48, 576
Eco81I CCTNAGG 1 cut(s) 99
FaeI CATG 2 cut(s) 226, 521
FaqI GGGAC 1 cut(s) 587
FatI CATG 2 cut(s) 222, 517
Fnu4HI GCNGC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 169
HgaI GACGC 1 cut(s) 461
Hin1II CATG 2 cut(s) 226, 521
HindIII AAGCTT 2 cut(s) 42, 251
HinfI GANTC 3 cut(s) 37, 203, 446
HphI GGTGA 4 cut(s) 17, 77, 430, 577
Hpy166II GTNNAC 3 cut(s) 445, 488, 498
Hpy188I TCNGA 2 cut(s) 75, 451
Hpy188III TCNNGA 2 cut(s) 245, 559
Hpy8I GTNNAC 3 cut(s) 445, 488, 498
HpyAV CCTTC 3 cut(s) 388, 457, 556
HpyCH4III ACNGT 2 cut(s) 442, 578
HpyCH4V TGCA 2 cut(s) 128, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 2 cut(s) 15, 99
Hsp92II CATG 2 cut(s) 226, 521
Kzo9I GATC 6 cut(s) 19, 70, 94, 195, 315, 358
LpnPI CCDG 7 cut(s) 133, 258, 318, 405, 429, 504, 543
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 3 cut(s) 212, 320, 578
MalI GATC 6 cut(s) 21, 72, 96, 197, 317, 360
MboI GATC 6 cut(s) 19, 70, 94, 195, 315, 358
MboII GAAGA 7 cut(s) 41, 77, 278, 302, 323, 403, 518
MflI RGATCY 4 cut(s) 94, 195, 315, 358
MluCI AATT 3 cut(s) 104, 185, 554
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 7 cut(s) 61, 93, 175, 229, 338, 348, 392
MroXI GAANNNNTTC 2 cut(s) 36, 554
MslI CAYNNNNRTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 6 cut(s) 19, 70, 94, 195, 315, 358
NlaIII CATG 2 cut(s) 226, 521
NlaIV GGNNCC 3 cut(s) 96, 197, 575
PdmI GAANNNNTTC 2 cut(s) 36, 554
PfeI GAWTC 2 cut(s) 37, 203
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PsiI TTATAA 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 96, 197, 575
PspPI GGNCC 2 cut(s) 488, 574
PsuI RGATCY 4 cut(s) 94, 195, 315, 358
RsaI GTAC 2 cut(s) 50, 141
RsaNI GTAC 2 cut(s) 49, 140
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 6 cut(s) 19, 70, 94, 195, 315, 358
Sau96I GGNCC 2 cut(s) 488, 574
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 1 cut(s) 440
SetI ASST 6 cut(s) 46, 135, 240, 255, 403, 567
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 2 cut(s) 488, 574
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 3 cut(s) 104, 185, 554
SsiI CCGC 2 cut(s) 12, 199
TaaI ACNGT 2 cut(s) 442, 578
TasI AATT 3 cut(s) 104, 185, 554
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 37, 203
TscAI CASTG 1 cut(s) 498
TspDTI ATGAA 5 cut(s) 186, 279, 324, 476, 563
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 2 cut(s) 488, 574
XapI RAATTY 2 cut(s) 104, 554
XmnI GAANNNNTTC 2 cut(s) 36, 554
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.