Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Forward (+)

1472378 .. 1476034

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G021100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCATGGGCTGAGGCACGCGTGGTCTCAAAGCCACTCCAGAAATTTCAGGGATCGTCAGCCAGAACGCAGAACAAAAGCAGAGCCATGGTTGCCACCGAAAAGGATCCAAGAGAGGAAGTCATCCAAGCATGGTACATGGATGACAGTGATGAAGACCAGAGGCTCCCCCATCACCGTGAGCCCAAGGAATTTGTATCCCTAGACCAACTTACTGAGCTTGGAGTTCTCAGCTGGCGTTTAGATGCTGATAACTATGAAACAGATGAGGAGTTGAAGAAAATTCGTGAAGAACGTGGTTACTCCTACATGGACTTCTGTGAGGTTTCCCCTGAAAAGCTGCCTAATTATGAAGAGAAGATAAAAAGTTTCTTTGAGGAACATCTTCACACTGATGAGGAGATCCGCTATGCTGTGGCAGGAAGTGGTTATTTTGATGTTAGGGACCGTAATGAACGTTGGATTCGTGTGTGGTTGAAAAAGGGTGGGTTGATTGTTTTGCCTGCTGGAATTTATCACCGCTTTACTTTGGACACAAACAACTACATAAAGGCAATGCGACTCTTTGTCGGTGATCCAGTTTGGACTCCCTTTAACCGCCCTCATGACCATCTTCCTGCAAGGCAGGAGTATGTTAAAGCTTTTGTGCATAAGGAAACTGGTGACCATGCAGTTGATGCTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

230

Amino Acids

26.92

Weight (kDa)

5.53

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	406, 520, 598
AclI	AACGTT	1 cut(s)	457
AclWI	GGATC	5 cut(s)	61, 101, 114, 397, 569
AcsI	RAATTY	4 cut(s)	44, 191, 282, 510
AfaI	GTAC	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	277, 478
AhdI	GACNNNNNGTC	1 cut(s)	566
AluBI	AGCT	4 cut(s)	220, 234, 340, 641
AluI	AGCT	4 cut(s)	220, 234, 340, 641
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	5 cut(s)	61, 101, 114, 397, 569
ApeKI	GCWGC	3 cut(s)	340, 680, 683
ApoI	RAATTY	4 cut(s)	44, 191, 282, 510
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	4 cut(s)	167, 509, 584, 674
AvaII	GGWCC	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	327, 667
BccI	CCATC	2 cut(s)	180, 618
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	681
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	341, 681, 684
BlsI	GCNGC	3 cut(s)	342, 682, 685
Bme18I	GGWCC	1 cut(s)	445
BmeRI	GACNNNNNGTC	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	3 cut(s)	108, 167, 446
BmsI	GCATC	2 cut(s)	235, 667
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	87, 186
Bse1I	ACTGG	2 cut(s)	578, 664
Bse3DI	GCAATG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	87, 186
BseGI	GGATG	2 cut(s)	123, 148
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	207, 244
BseNI	ACTGG	2 cut(s)	578, 664
BseRI	GAGGAG	2 cut(s)	284, 413
BseXI	GCAGC	2 cut(s)	327, 667
Bsh1236I	CGCG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	53, 106, 402, 574
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	3 cut(s)	406, 520, 598
BspCNI	CTCAG	3 cut(s)	4, 208, 243
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	108, 167, 446
BspMAI	CTGCAG	1 cut(s)	685
BspPI	GGATC	5 cut(s)	61, 101, 114, 397, 569
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	578, 664
BssECI	CCNNGG	2 cut(s)	87, 186
BssMI	GATC	4 cut(s)	53, 106, 402, 574
BssT1I	CCWWGG	2 cut(s)	87, 186
Bst4CI	ACNGT	3 cut(s)	149, 179, 449
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	19, 236, 504
BstDEI	CTNAG	3 cut(s)	12, 216, 230
BstDSI	CCRYGG	1 cut(s)	87
BstEII	GGTNACC	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	123, 148
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	4 cut(s)	56, 109, 405, 577
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	4 cut(s)	53, 106, 402, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 677
BstPI	GGTNACC	1 cut(s)	662
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	327, 667
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	106, 402
BstYI	RGATCY	2 cut(s)	106, 402
BsuI	GTATCC	1 cut(s)	208
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	123, 148
BtsIMutI	CAGTG	2 cut(s)	154, 390
Cac8I	GCNNGC	3 cut(s)	19, 236, 504
CciI	TCATGA	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	8 cut(s)	6, 88, 132, 139, 310, 605, 668, 687
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	12, 216, 230
DpnI	GATC	4 cut(s)	55, 108, 404, 576
DpnII	GATC	4 cut(s)	53, 106, 402, 574
DriI	GACNNNNNGTC	1 cut(s)	566
Eam1104I	CTCTTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	87, 186
Eco24I	GRGCYC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	445
Eco91I	GGTNACC	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	87, 186
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	2 cut(s)	87, 186
FaeI	CATG	8 cut(s)	9, 91, 135, 142, 313, 608, 671, 690
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	8 cut(s)	5, 87, 131, 138, 309, 604, 667, 686
Fnu4HI	GCNGC	3 cut(s)	341, 681, 684
FokI	GGATG	2 cut(s)	110, 155
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	3 cut(s)	341, 681, 684
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	3 cut(s)	341, 681, 684
GsuI	CTGGAG	1 cut(s)	23
Hin1II	CATG	8 cut(s)	9, 91, 135, 142, 313, 608, 671, 690
HindIII	AAGCTT	1 cut(s)	639
HinfI	GANTC	3 cut(s)	463, 561, 586
HphI	GGTGA	4 cut(s)	167, 509, 584, 674
Hpy188III	TCNNGA	3 cut(s)	40, 287, 605
HpyCH4III	ACNGT	3 cut(s)	149, 179, 449
HpyCH4IV	ACGT	2 cut(s)	295, 457
HpyCH4V	TGCA	4 cut(s)	620, 649, 671, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 677
HpyF3I	CTNAG	3 cut(s)	12, 216, 230
HpySE526I	ACGT	2 cut(s)	295, 457
Hsp92II	CATG	8 cut(s)	9, 91, 135, 142, 313, 608, 671, 690
Kzo9I	GATC	4 cut(s)	53, 106, 402, 574
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	2 cut(s)	327, 667
LweI	GCATC	2 cut(s)	235, 667
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	295, 457
MaeIII	GTNAC	2 cut(s)	299, 662
MalI	GATC	4 cut(s)	55, 108, 404, 576
MboI	GATC	4 cut(s)	53, 106, 402, 574
MboII	GAAGA	7 cut(s)	167, 289, 302, 365, 370, 377, 605
MflI	RGATCY	2 cut(s)	106, 402
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	5 cut(s)	44, 191, 282, 346, 510
MluI	ACGCGT	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	555, 580
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	8 cut(s)	7, 109, 156, 262, 316, 370, 391, 612
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	2 cut(s)	594, 636
MslI	CAYNNNNRTG	2 cut(s)	177, 393
MspA1I	CMGCKG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	92, 677
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	53, 106, 402, 574
NlaIII	CATG	8 cut(s)	9, 91, 135, 142, 313, 608, 671, 690
NlaIV	GGNNCC	3 cut(s)	108, 167, 446
NmuCI	GTSAC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 463
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	3 cut(s)	342, 682, 685
PleI	GAGTC	2 cut(s)	555, 580
PpsI	GAGTC	2 cut(s)	555, 580
Psp1406I	AACGTT	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	108, 167, 446
PspPI	GGNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	106, 402
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	177, 393
SaqAI	TTAA	2 cut(s)	594, 636
SatI	GCNGC	3 cut(s)	341, 681, 684
Sau3AI	GATC	4 cut(s)	53, 106, 402, 574
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	2 cut(s)	555, 580
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	7 cut(s)	222, 236, 298, 327, 342, 460, 643
SfaNI	GCATC	2 cut(s)	235, 667
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	177, 393
Sse9I	AATT	5 cut(s)	44, 191, 282, 346, 510
SsiI	CCGC	3 cut(s)	406, 520, 598
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	87, 186
TaaI	ACNGT	3 cut(s)	149, 179, 449
TaiI	ACGT	2 cut(s)	298, 460
TasI	AATT	5 cut(s)	44, 191, 282, 346, 510
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	2 cut(s)	594, 636
Tru9I	TTAA	2 cut(s)	594, 636
TscAI	CASTG	2 cut(s)	154, 397
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	340, 680, 683
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	4 cut(s)	168, 273, 366, 468
TspRI	CASTG	2 cut(s)	154, 397
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	4 cut(s)	44, 191, 282, 510
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.