Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Forward (+)

17731751 .. 17735432

Gene Structure 3682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1199600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTGCCTCCCAAAGGGATCCTAGAGAAGAAGTCATCCAAGCATGGTACATGGATGATAGTGATGAAGACCAGAGGCTCCCCCATCACAAGGAGCCCAAGGAATTTGTATCCCTGGACCAACTTGCCGAGCTTGGAGTGCTCAGCTGGCATCTAGATGCTGATAACTACGAAACTGATGAGGAGTTGAAGAAGATTCGTGAAGAACGTGGTTACTCCTACATGGACTTCTGTGAGGTTTGCCCTGAAAAGCTTCCTAATTATGAGGAGAAGATAAAAAATTTCTTTGAGGAACATCTTCACACTGATGAGGAAATCCGATATGCTGTGGATGGAAGTGGTTATTTTGATGTTAGGGACCACGATGAACGTTGGATTCGCGTATGGCTGAAAAAGGGGGGAATGATTGTTTTGCCTGCTGGAATTTATCACCGATTCACTTTGGACACAAACAACTACATAAAGGCAATGCGTCTATTTATTGGCGATCCAGTTTGGACCCCCTTTAACCGTCCTCATGATCATCTTCCTGCAAGGGAGGAGTATCTTAAAGCTTTTGTGCACAAGGAAACTGGTGACCATGCAGTTAACGCTGCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

201

Amino Acids

23.73

Weight (kDa)

5.0

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	14 - 168	1.7e-65	ARD/ARD' family
Cupin_2	PF07883	96 - 151	1.1e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	596
AclI	AACGTT	1 cut(s)	370
AclWI	GGATC	3 cut(s)	14, 27, 482
AcsI	RAATTY	3 cut(s)	104, 280, 423
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	15, 91
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	133, 147, 253, 554
AluI	AGCT	4 cut(s)	133, 147, 253, 554
Alw21I	GWGCWC	2 cut(s)	144, 564
Alw44I	GTGCAC	1 cut(s)	560
AlwI	GGATC	3 cut(s)	14, 27, 482
ApaLI	GTGCAC	1 cut(s)	560
ApeKI	GCWGC	2 cut(s)	5, 593
ApoI	RAATTY	3 cut(s)	104, 280, 423
Asp700I	GAANNNNTTC	2 cut(s)	252, 297
AspS9I	GGNCC	3 cut(s)	118, 358, 498
AsuHPI	GGTGA	2 cut(s)	422, 587
AvaII	GGWCC	3 cut(s)	118, 358, 498
BaeGI	GKGCMC	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	144, 564
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	93, 326
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	520
BfaI	CTAG	2 cut(s)	24, 155
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	3 cut(s)	6, 594, 597
BlpI	GCTNAGC	1 cut(s)	143
BlsI	GCNGC	3 cut(s)	7, 595, 598
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	3 cut(s)	118, 358, 498
BmgT120I	GGNCC	3 cut(s)	118, 358, 498
BmiI	GGNNCC	5 cut(s)	21, 80, 96, 359, 500
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	148, 160
BpiI	GAAGAC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	99, 114
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 91
Bse1I	ACTGG	2 cut(s)	491, 577
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	99, 114
BseGI	GGATG	3 cut(s)	36, 61, 337
BseLI	CCNNNNNNNGG	2 cut(s)	15, 91
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	491, 577
BseRI	GAGGAG	3 cut(s)	197, 281, 554
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	144, 564
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	15, 91
BsmFI	GGGAC	1 cut(s)	371
Bsp1286I	GDGCHC	3 cut(s)	99, 144, 564
Bsp143I	GATC	3 cut(s)	19, 487, 520
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	1 cut(s)	596
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	5 cut(s)	21, 80, 96, 359, 500
BspPI	GGATC	3 cut(s)	14, 27, 482
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	491, 577
BssECI	CCNNGG	2 cut(s)	99, 114
BssMI	GATC	3 cut(s)	19, 487, 520
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	512
BstC8I	GCNNGC	2 cut(s)	149, 417
BstDEI	CTNAG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	575
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	3 cut(s)	36, 61, 337
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	3 cut(s)	22, 490, 523
BstMBI	GATC	3 cut(s)	19, 487, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
BstNI	CCWGG	1 cut(s)	116
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuI	GTATCC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	36, 61, 337
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	149, 417
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	118, 358, 498
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	5 cut(s)	45, 52, 223, 518, 581
CviJI	RGCY	8 cut(s)	5, 79, 97, 133, 147, 253, 388, 554
CviKI_1	RGCY	8 cut(s)	5, 79, 97, 133, 147, 253, 388, 554
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	21, 489, 522
DpnII	GATC	3 cut(s)	19, 487, 520
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	3 cut(s)	118, 358, 498
Eco91I	GGTNACC	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	48, 55, 226, 521, 584
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	5 cut(s)	44, 51, 222, 517, 580
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	6, 594, 597
FokI	GGATG	3 cut(s)	23, 68, 344
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	6, 594, 597
FspBI	CTAG	2 cut(s)	24, 155
GluI	GCNGC	3 cut(s)	6, 594, 597
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	5 cut(s)	48, 55, 226, 521, 584
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	2 cut(s)	251, 552
HinfI	GANTC	3 cut(s)	196, 376, 435
HpaI	GTTAAC	1 cut(s)	589
HphI	GGTGA	2 cut(s)	422, 587
Hpy166II	GTNNAC	2 cut(s)	562, 589
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	155, 200, 518
Hpy8I	GTNNAC	2 cut(s)	562, 589
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	2 cut(s)	208, 370
HpyCH4V	TGCA	3 cut(s)	533, 562, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	2 cut(s)	208, 370
Hsp92II	CATG	5 cut(s)	48, 55, 226, 521, 584
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	19, 487, 520
LmnI	GCTCC	2 cut(s)	84, 94
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	2 cut(s)	148, 160
MaeI	CTAG	2 cut(s)	24, 155
MaeII	ACGT	2 cut(s)	208, 370
MaeIII	GTNAC	2 cut(s)	212, 575
MalI	GATC	3 cut(s)	21, 489, 522
MboI	GATC	3 cut(s)	19, 487, 520
MboII	GAAGA	8 cut(s)	41, 80, 202, 205, 215, 283, 290, 518
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	3 cut(s)	99, 144, 564
MluCI	AATT	4 cut(s)	104, 259, 280, 423
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	9 cut(s)	19, 69, 175, 229, 259, 283, 304, 525, 532
MroXI	GAANNNNTTC	2 cut(s)	252, 297
MseI	TTAA	3 cut(s)	507, 549, 588
MslI	CAYNNNNRTG	2 cut(s)	156, 306
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
NdeII	GATC	3 cut(s)	19, 487, 520
NlaIII	CATG	5 cut(s)	48, 55, 226, 521, 584
NlaIV	GGNNCC	5 cut(s)	21, 80, 96, 359, 500
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PdmI	GAANNNNTTC	2 cut(s)	252, 297
PfeI	GAWTC	3 cut(s)	196, 376, 435
PkrI	GCNGC	3 cut(s)	7, 595, 598
Psp1406I	AACGTT	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	5 cut(s)	21, 80, 96, 359, 500
PspPI	GGNCC	3 cut(s)	118, 358, 498
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	2 cut(s)	156, 306
SaqAI	TTAA	3 cut(s)	507, 549, 588
SatI	GCNGC	3 cut(s)	6, 594, 597
Sau3AI	GATC	3 cut(s)	19, 487, 520
Sau96I	GGNCC	3 cut(s)	118, 358, 498
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	3 cut(s)	99, 144, 564
SetI	ASST	7 cut(s)	135, 149, 211, 240, 255, 373, 556
SfaNI	GCATC	2 cut(s)	148, 160
SinI	GGWCC	3 cut(s)	118, 358, 498
SmiMI	CAYNNNNRTG	2 cut(s)	156, 306
Sse9I	AATT	4 cut(s)	104, 259, 280, 423
SsiI	CCGC	1 cut(s)	596
SspMI	CTAG	2 cut(s)	24, 155
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	2 cut(s)	211, 373
TasI	AATT	4 cut(s)	104, 259, 280, 423
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	196, 376, 435
Tru1I	TTAA	3 cut(s)	507, 549, 588
Tru9I	TTAA	3 cut(s)	507, 549, 588
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	5, 593
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	2 cut(s)	81, 381
TspRI	CASTG	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	560
VpaK11BI	GGWCC	3 cut(s)	118, 358, 498
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	3 cut(s)	104, 280, 423
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	2 cut(s)	252, 297
XspI	CTAG	2 cut(s)	24, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.