Rh4AG017900

Catalyzes the formation of formate and 2-keto-4- methylthiobutyrate (KMTB) from 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
3495346 .. 3497600
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG017900.1

Sequence Viewer

Length: 597 bp
ATGGTTGCCCCCCAAAAGGACCCGAGAGAGGAAGTCATTCAAGCATGGTACATGGATGATAGTGATGAGGACCAGAGACTTCCCCATCACCGCGAGCCCAAGGAATTTGTATCCCTGGACCAACTTGCTGAGCTTGGGGTTCTCAGCTGGCGTTTAGATGCTGATAACTATGAAACCGATGAGGAGTTGAAGAAGATTCGTGAAGACCGTGGTTACTCCTACATGGACTTCTGTGAGGTTTGCCCTGAAAAGCTTCCAAATTATGAGGAGAAGATAAAGAACTTCTTTGAGGAACATCTTCACACTGATGAGGAGATCCGCTATGCTGTGGCAGGAAGTGGTTATTTTGATGTTAGGGACTGTAACGAACACTGGATTCGTGTATGGCTGAAAAAGGGTGGATTGATTGTTTTGCCTGCTGGAATTTATCACCGCTTTACTTTGGACACAGACAACTACATAAAGGCAATGCGGCTTTTCAGTGGTGATCCAATTTGGACTCCATTCAATCGCCCTCATGACGATCTTCCAGCAAGGAAGGAGTACCTCAAAGCTTTTGTGGATAAAGAAGCTGGTGAACATGCAGTTGCAGCCTGA

Protein Analysis

198

Amino Acids

23.4

Weight (kDa)

4.88

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARD PF03079 14 - 168 1.6e-64 ARD/ARD' family
Cupin_2 PF07883 96 - 152 2.2e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 91, 319, 433, 472
AclWI GGATC 2 cut(s) 310, 482
AcsI RAATTY 2 cut(s) 104, 423
AfaI GTAC 2 cut(s) 50, 545
AfiI CCNNNNNNNGG 2 cut(s) 16, 28
AgsI TTSAA 3 cut(s) 41, 190, 508
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 5 cut(s) 133, 147, 253, 554, 572
AluI AGCT 5 cut(s) 133, 147, 253, 554, 572
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 310, 482
Ama87I CYCGRG 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 2 cut(s) 104, 423
Asp700I GAANNNNTTC 3 cut(s) 36, 252, 297
AspS9I GGNCC 3 cut(s) 19, 70, 118
AsuHPI GGTGA 4 cut(s) 80, 422, 497, 587
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 3 cut(s) 19, 70, 118
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 210
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 116
BciVI GTATCC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 2 cut(s) 473, 591
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 2 cut(s) 474, 592
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 3 cut(s) 19, 70, 118
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 3 cut(s) 19, 70, 118
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 99, 114, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 28
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 99, 114, 208
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 16, 28
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 120, 157
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 3 cut(s) 197, 281, 326
Bsh1236I CGCG 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 16, 28
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 315, 487, 523
Bsp1720I GCTNAGC 1 cut(s) 129
BspACI CCGC 4 cut(s) 91, 319, 433, 472
BspCNI CTCAG 2 cut(s) 121, 156
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 310, 482
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 99, 114, 208
BssMI GATC 3 cut(s) 315, 487, 523
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 209, 362
BstC8I GCNNGC 3 cut(s) 95, 149, 417
BstDEI CTNAG 2 cut(s) 129, 143
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 318, 490, 526
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 315, 487, 523
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuI GTATCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 3 cut(s) 303, 370, 487
Cac8I GCNNGC 3 cut(s) 95, 149, 417
CciI TCATGA 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 19, 70, 118
Csp6I GTAC 2 cut(s) 49, 544
CviAII CATG 5 cut(s) 45, 52, 223, 518, 581
CviJI RGCY 9 cut(s) 97, 133, 147, 253, 388, 475, 554, 572, 593
CviKI_1 RGCY 9 cut(s) 97, 133, 147, 253, 388, 475, 554, 572, 593
CviQI GTAC 2 cut(s) 49, 544
DdeI CTNAG 2 cut(s) 129, 143
DpnI GATC 3 cut(s) 317, 489, 525
DpnII GATC 3 cut(s) 315, 487, 523
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 19, 70, 118
Eco88I CYCGRG 1 cut(s) 22
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 48, 55, 226, 521, 584
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 371
FatI CATG 5 cut(s) 44, 51, 222, 517, 580
Fnu4HI GCNGC 2 cut(s) 473, 591
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 473, 591
GluI GCNGC 2 cut(s) 473, 591
Hin1II CATG 5 cut(s) 48, 55, 226, 521, 584
HindIII AAGCTT 2 cut(s) 251, 552
HinfI GANTC 3 cut(s) 196, 376, 499
HphI GGTGA 4 cut(s) 80, 422, 497, 587
Hpy166II GTNNAC 1 cut(s) 578
Hpy188III TCNNGA 2 cut(s) 200, 518
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 2 cut(s) 209, 362
HpyCH4V TGCA 2 cut(s) 584, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 2 cut(s) 129, 143
Hsp92II CATG 5 cut(s) 48, 55, 226, 521, 584
Kzo9I GATC 3 cut(s) 315, 487, 523
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 212, 362
MalI GATC 3 cut(s) 317, 489, 525
MboI GATC 3 cut(s) 315, 487, 523
MboII GAAGA 6 cut(s) 202, 205, 215, 283, 290, 518
MflI RGATCY 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 4 cut(s) 104, 259, 423, 492
MlyI GAGTC 1 cut(s) 493
MnlI CCTC 9 cut(s) 22, 61, 175, 229, 259, 283, 304, 525, 557
MroXI GAANNNNTTC 3 cut(s) 36, 252, 297
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 3 cut(s) 315, 487, 523
NlaIII CATG 5 cut(s) 48, 55, 226, 521, 584
NlaIV GGNNCC 1 cut(s) 21
NspI RCATGY 1 cut(s) 584
PagI TCATGA 1 cut(s) 517
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdmI GAANNNNTTC 3 cut(s) 36, 252, 297
PfeI GAWTC 2 cut(s) 196, 376
PkrI GCNGC 2 cut(s) 474, 592
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PpuMI RGGWCCY 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 3 cut(s) 19, 70, 118
PspPPI RGGWCCY 1 cut(s) 19
PsuI RGATCY 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 147
RsaI GTAC 2 cut(s) 50, 545
RsaNI GTAC 2 cut(s) 49, 544
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 2 cut(s) 473, 591
Sau3AI GATC 3 cut(s) 315, 487, 523
Sau96I GGNCC 3 cut(s) 19, 70, 118
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 135, 149, 240, 255, 549, 556, 574
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 3 cut(s) 19, 70, 118
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 4 cut(s) 104, 259, 423, 492
SsiI CCGC 4 cut(s) 91, 319, 433, 472
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 2 cut(s) 209, 362
TasI AATT 4 cut(s) 104, 259, 423, 492
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 2 cut(s) 196, 376
TscAI CASTG 3 cut(s) 310, 377, 487
TseI GCWGC 1 cut(s) 590
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 3 cut(s) 310, 377, 487
VpaK11BI GGWCC 3 cut(s) 19, 70, 118
XapI RAATTY 2 cut(s) 104, 423
XceI RCATGY 1 cut(s) 584
XmnI GAANNNNTTC 3 cut(s) 36, 252, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.