Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Forward (+)

13102559 .. 13104542

Gene Structure 1984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17320.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGATGATAGTGATGAAGACCAGAGGCTCCCCCATCACAGGGAGCCCAAGGAATTTGTATCCCTGGACCAACTTGCCGATGCTGATAACTATGAAACAGATGAGGAGTTGAAGAAGATTCGTGAAGAACGTGGATACTCCTACATGGACTTCTGTGAGGTTTGCCCTGAAAAGCTTCCTAATTATGAGGAGAAGATAAAAAATTTCTTTGAGGAACATCTTCACACTGATGAGGAAATTCGATATGCTGTGGATGGAAGTGGTTATTTTGATGTTAGGGACCGCGATGAACGTTGGATTCGCGTATGGCTGAAAAAGGGGGGAATGATTATTTTGCCTGCTGGAATTTATCACCGATTCACTTTGGACACAAACAACTACATAAAGGCAATGCGTCTATTTATTGGCGATCCAGTTTGGACCCCCTTTAACCGTCCTCATCGATCATCTTCCTGCAAGGGAGGAGTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

158

Amino Acids

18.7

Weight (kDa)

5.07

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	285, 303
AciI	CCGC	1 cut(s)	283
AclI	AACGTT	1 cut(s)	292
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	4 cut(s)	53, 202, 237, 345
AfiI	CCNNNNNNNGG	2 cut(s)	39, 40
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AlwI	GGATC	1 cut(s)	404
ApoI	RAATTY	4 cut(s)	53, 202, 237, 345
Asp700I	GAANNNNTTC	2 cut(s)	174, 219
AspS9I	GGNCC	3 cut(s)	67, 280, 420
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	3 cut(s)	67, 280, 420
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	2 cut(s)	42, 248
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	2 cut(s)	70, 128
BfuI	GTATCC	2 cut(s)	70, 128
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	67, 280, 420
BmgT120I	GGNCC	3 cut(s)	67, 280, 420
BmiI	GGNNCC	4 cut(s)	29, 45, 281, 422
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	48, 63
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 40
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	48, 63
BseGI	GGATG	2 cut(s)	10, 259
BseLI	CCNNNNNNNGG	2 cut(s)	39, 40
BseMI	GCAATG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	119, 203
Bsh1236I	CGCG	2 cut(s)	285, 303
BshVI	ATCGAT	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	39, 40
BsmFI	GGGAC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	409, 443
BspACI	CCGC	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	285, 303
BspLI	GGNNCC	4 cut(s)	29, 45, 281, 422
BspPI	GGATC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	2 cut(s)	48, 63
BssMI	GATC	2 cut(s)	409, 443
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	10, 259
BstFNI	CGCG	2 cut(s)	285, 303
BstKTI	GATC	2 cut(s)	412, 446
BstMBI	GATC	2 cut(s)	409, 443
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	285, 303
BstV2I	GAAGAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	442
BsuI	GTATCC	2 cut(s)	70, 128
BsuTUI	ATCGAT	1 cut(s)	442
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	10, 259
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	67, 280, 420
ClaI	ATCGAT	1 cut(s)	442
CseI	GACGC	1 cut(s)	383
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	4 cut(s)	28, 46, 175, 310
CviKI_1	RGCY	4 cut(s)	28, 46, 175, 310
DpnI	GATC	2 cut(s)	411, 445
DpnII	GATC	2 cut(s)	409, 443
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	67, 280, 420
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	148
FaiI	YATR	6 cut(s)	93, 146, 186, 246, 307, 383
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	1 cut(s)	144
FokI	GGATG	2 cut(s)	17, 266
FriOI	GRGCYC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	118, 298, 357
HphI	GGTGA	1 cut(s)	344
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	130, 292
HpyCH4V	TGCA	1 cut(s)	456
HpySE526I	ACGT	2 cut(s)	130, 292
Hsp92II	CATG	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	409, 443
LmnI	GCTCC	2 cut(s)	33, 43
LpnPI	CCDG	9 cut(s)	25, 35, 50, 77, 180, 327, 351, 426, 466
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	2 cut(s)	130, 292
MalI	GATC	2 cut(s)	411, 445
MboI	GATC	2 cut(s)	409, 443
MboII	GAAGA	7 cut(s)	29, 124, 127, 137, 205, 212, 441
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	5 cut(s)	53, 181, 202, 237, 345
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	8 cut(s)	18, 97, 151, 181, 205, 226, 447, 455
MroXI	GAANNNNTTC	2 cut(s)	174, 219
MseI	TTAA	2 cut(s)	429, 472
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	285, 303
NdeII	GATC	2 cut(s)	409, 443
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	4 cut(s)	29, 45, 281, 422
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	174, 219
PfeI	GAWTC	3 cut(s)	118, 298, 357
Psp1406I	AACGTT	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	4 cut(s)	29, 45, 281, 422
PspPI	GGNCC	3 cut(s)	67, 280, 420
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	429, 472
Sau3AI	GATC	2 cut(s)	409, 443
Sau96I	GGNCC	3 cut(s)	67, 280, 420
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	4 cut(s)	133, 162, 177, 295
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	3 cut(s)	67, 280, 420
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	5 cut(s)	53, 181, 202, 237, 345
SsiI	CCGC	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	133, 295
TaqI	TCGA	2 cut(s)	241, 442
TasI	AATT	5 cut(s)	53, 181, 202, 237, 345
TfiI	GAWTC	3 cut(s)	118, 298, 357
Tru1I	TTAA	2 cut(s)	429, 472
Tru9I	TTAA	2 cut(s)	429, 472
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	30, 108, 303
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	3 cut(s)	67, 280, 420
XapI	RAATTY	4 cut(s)	53, 202, 237, 345
XmnI	GAANNNNTTC	2 cut(s)	174, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.