Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Reverse (-)

62995953 .. 62999626

Gene Structure 3674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCAGTTGATGAGGTTGTTTGTGGGAGAGTCTGTATGGACTGCTTACAATCGACCACAGGAAGAACATCCAGCTAGGAAGGAGTACATTGAGAGCTACACTAAGAAGGGATCGACTTCAGGCAAACACAGAACAAAAGCAGCTATGGTTGCCCCCCAAAAGGACCCGAGAGAGGAAGTCATTCAAGCATGGTACATGGATGATAGTGATGAGGACCAGAGACTACCCCATCACCGCGAGCCCAAGGAATTTGTATCCCTGGACCAACTTGCTGAGCTTGGGGTTCTCAGCTGGCGTTTAGATGCTGATAACTATGAAGCAGATGAGGAGTTGAAGAAGATTCGTGAAGAACGTGGTTACTCCTACATGGACTTCTGTGAGGTTTGCCCTGAAAAGCTTCCAAATTATGAGGAGAAGATTAAGAACTTCTTTGAGGAACATCTCCACACTGATGAGGAGATCCGCTATGCTGTGGCAGGAAGTGGTTATTTTGATGTTAGGGACCGTAACGAACGCTGGATTCGTGTATGGGTGAAAACGGGTGGAATGATTGTTTTGCCTGCTGGAATTTATCACCGCTTTACTTTGGACACAAACAACTACATAAAGGCAATGCGGCTTTTCATTGGTGATCCAATTTGGACTCCATTCAATCGCCCTCATGACGATCTTCCAGCAAGAAAGGAGTACCTCAAAGCTTTTGTGGATAAAGAAGCTGGTGAACATGCAGTTTCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

247

Amino Acids

29.05

Weight (kDa)

5.47

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	62 - 216	2.8e-64	ARD/ARD' family
Cupin_2	PF07883	144 - 199	3.4e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	237
AciI	CCGC	4 cut(s)	235, 463, 577, 616
AclWI	GGATC	3 cut(s)	118, 454, 626
AcsI	RAATTY	2 cut(s)	248, 567
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	86, 194, 689
AfiI	CCNNNNNNNGG	2 cut(s)	160, 172
AgsI	TTSAA	3 cut(s)	185, 334, 652
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	8 cut(s)	74, 96, 143, 277, 291, 397, 698, 716
AluI	AGCT	8 cut(s)	74, 96, 143, 277, 291, 397, 698, 716
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	118, 454, 626
Ama87I	CYCGRG	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	2 cut(s)	248, 567
Asp700I	GAANNNNTTC	2 cut(s)	180, 396
AspS9I	GGNCC	4 cut(s)	163, 214, 262, 502
AsuHPI	GGTGA	5 cut(s)	224, 544, 566, 641, 731
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	4 cut(s)	163, 214, 262, 502
BanII	GRGCYC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	2 cut(s)	141, 617
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	2 cut(s)	142, 618
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	4 cut(s)	163, 214, 262, 502
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	163, 214, 262, 502
BmiI	GGNNCC	2 cut(s)	165, 503
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	292
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	243, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 172
Bse3DI	GCAATG	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	243, 258
BseGI	GGATG	2 cut(s)	67, 205
BseLI	CCNNNNNNNGG	2 cut(s)	160, 172
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	264, 301
BseRI	GAGGAG	3 cut(s)	341, 425, 470
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	160, 172
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	110, 459, 631, 667
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	4 cut(s)	235, 463, 577, 616
BspCNI	CTCAG	2 cut(s)	265, 300
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	165, 503
BspPI	GGATC	3 cut(s)	118, 454, 626
BsrDI	GCAATG	1 cut(s)	618
BssECI	CCNNGG	2 cut(s)	243, 258
BssMI	GATC	4 cut(s)	110, 459, 631, 667
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	239, 293, 561
BstDEI	CTNAG	3 cut(s)	102, 273, 287
BstF5I	GGATG	2 cut(s)	67, 205
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	4 cut(s)	113, 462, 634, 670
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	110, 459, 631, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 734
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuI	GTATCC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	67, 205
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	239, 293, 561
CciI	TCATGA	1 cut(s)	661
Cfr13I	GGNCC	4 cut(s)	163, 214, 262, 502
Csp6I	GTAC	3 cut(s)	85, 193, 688
CviAII	CATG	5 cut(s)	189, 196, 367, 662, 725
CviQI	GTAC	3 cut(s)	85, 193, 688
DdeI	CTNAG	3 cut(s)	102, 273, 287
DpnI	GATC	4 cut(s)	112, 461, 633, 669
DpnII	GATC	4 cut(s)	110, 459, 631, 667
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	4 cut(s)	163, 214, 262, 502
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	192, 199, 370, 665, 728
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	5 cut(s)	188, 195, 366, 661, 724
Fnu4HI	GCNGC	2 cut(s)	141, 617
FokI	GGATG	2 cut(s)	54, 212
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	141, 617
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	141, 617
Hin1II	CATG	5 cut(s)	192, 199, 370, 665, 728
HindIII	AAGCTT	2 cut(s)	395, 696
HinfI	GANTC	4 cut(s)	29, 340, 520, 643
HphI	GGTGA	5 cut(s)	224, 544, 566, 641, 731
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188III	TCNNGA	2 cut(s)	344, 662
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	2 cut(s)	73, 100
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	4, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 734
HpyF3I	CTNAG	3 cut(s)	102, 273, 287
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	192, 199, 370, 665, 728
Kzo9I	GATC	4 cut(s)	110, 459, 631, 667
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	356, 506
MalI	GATC	4 cut(s)	112, 461, 633, 669
MboI	GATC	4 cut(s)	110, 459, 631, 667
MboII	GAAGA	6 cut(s)	74, 346, 349, 359, 427, 662
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	4 cut(s)	248, 403, 567, 636
MlyI	GAGTC	2 cut(s)	38, 637
MroXI	GAANNNNTTC	2 cut(s)	180, 396
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	149, 734
NdeII	GATC	4 cut(s)	110, 459, 631, 667
NlaIII	CATG	5 cut(s)	192, 199, 370, 665, 728
NlaIV	GGNNCC	2 cut(s)	165, 503
NspI	RCATGY	1 cut(s)	728
PagI	TCATGA	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	2 cut(s)	349, 520
PdmI	GAANNNNTTC	2 cut(s)	180, 396
PfeI	GAWTC	2 cut(s)	340, 520
PkrI	GCNGC	2 cut(s)	142, 618
PleI	GAGTC	2 cut(s)	37, 637
PpsI	GAGTC	2 cut(s)	37, 637
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	165, 503
PspPI	GGNCC	4 cut(s)	163, 214, 262, 502
PspPPI	RGGWCCY	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	459
PvuII	CAGCTG	1 cut(s)	291
RsaI	GTAC	3 cut(s)	86, 194, 689
RsaNI	GTAC	3 cut(s)	85, 193, 688
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	141, 617
Sau3AI	GATC	4 cut(s)	110, 459, 631, 667
Sau96I	GGNCC	4 cut(s)	163, 214, 262, 502
SchI	GAGTC	2 cut(s)	38, 637
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	4 cut(s)	163, 214, 262, 502
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	4 cut(s)	248, 403, 567, 636
SsiI	CCGC	4 cut(s)	235, 463, 577, 616
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	52, 113
TasI	AATT	4 cut(s)	248, 403, 567, 636
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	2 cut(s)	340, 520
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	330, 613
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	4 cut(s)	163, 214, 262, 502
XapI	RAATTY	2 cut(s)	248, 567
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	2 cut(s)	180, 396
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.