Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Forward (+)

18032798 .. 18036495

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1199600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTTGCCACCCAAAAGGATCCTAGAGAGGAAGTCATCCAAGCATGGTACATGGATGATAGTGATGAAGACCAGAGGCTCCCCCATCACAAGGAGTCCAAGGAATTTGTATCCTTGGACCAACTTGCCGAGCTTGGAGTGCTCAGTTGGCGTCTAGATGCTGATAACTATGAAACAGATGAGGAGTTGAAGAAGATTCGTGAAGAACACGGTTACTCCTACATGGACTTCTGTGAGGTTTGCCCTGTAAAGCTTCCTAATTATGAGCAGAAGTTAAAAAATTTCTTTGAGGAACATCTTCACACTGATGAGGAGATCCGATACTCTGTGGATGGAAGTGGTTATTTCGATGTTAGGGACCGAAATGAATGTTGGATTCGCGTATGGGTGAAAAAGGGGGGAATGATTGTTTTGCCTGCTGGAATTTATCACCGATTTACATTGGACACAAACAACTACATAAAGGCAATGCGTCTCTTTATTGGTGATCCAGTTTGGACTCCCTATAATCGTCCTCATGATCATCTTCCCGCAAGGGAGGAGTATCTTAAAGCTTTTGTGCATAAGGAAACTGGTGACCATGCAGTTAATGCTGCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

201

Amino Acids

23.68

Weight (kDa)

5.11

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARD	PF03079	14 - 168	1.6e-62	ARD/ARD' family
Cupin_2	PF07883	96 - 151	5.3e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AciI	CCGC	2 cut(s)	531, 596
AclWI	GGATC	4 cut(s)	14, 27, 310, 482
AcsI	RAATTY	3 cut(s)	104, 280, 423
AcyI	GRCGYC	1 cut(s)	151
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	190
AjuI	GAANNNNNNNTTGG	2 cut(s)	355, 387
AluBI	AGCT	3 cut(s)	133, 253, 554
AluI	AGCT	3 cut(s)	133, 253, 554
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	4 cut(s)	14, 27, 310, 482
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	3 cut(s)	104, 280, 423
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	118, 358
AsuHPI	GGTGA	4 cut(s)	400, 422, 497, 587
AvaII	GGWCC	2 cut(s)	118, 358
BamHI	GGATCC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	93, 326
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	24, 155
BfuI	GTATCC	1 cut(s)	121
BisI	GCNGC	2 cut(s)	594, 597
BlsI	GCNGC	2 cut(s)	595, 598
Bme18I	GGWCC	2 cut(s)	118, 358
BmgT120I	GGNCC	2 cut(s)	118, 358
BmiI	GGNNCC	3 cut(s)	21, 80, 359
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	99, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	491, 577
Bse3DI	GCAATG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	99, 114
BseGI	GGATG	3 cut(s)	36, 61, 337
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	491, 577
BseRI	GAGGAG	3 cut(s)	197, 326, 554
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	479
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	19, 315, 487, 520
BspACI	CCGC	2 cut(s)	531, 596
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	21, 80, 359
BspPI	GGATC	4 cut(s)	14, 27, 310, 482
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	491, 577
BssECI	CCNNGG	2 cut(s)	99, 114
BssMI	GATC	4 cut(s)	19, 315, 487, 520
BssNI	GRCGYC	1 cut(s)	151
BssT1I	CCWWGG	2 cut(s)	99, 114
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	143
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	36, 61, 337
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	22, 318, 490, 523
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	4 cut(s)	19, 315, 487, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
BstPI	GGTNACC	1 cut(s)	575
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	19, 315
BstYI	RGATCY	2 cut(s)	19, 315
BsuI	GTATCC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	36, 61, 337
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	118, 358
CseI	GACGC	2 cut(s)	140, 461
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	5 cut(s)	45, 52, 223, 518, 581
CviJI	RGCY	4 cut(s)	79, 133, 253, 554
CviKI_1	RGCY	4 cut(s)	79, 133, 253, 554
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	4 cut(s)	21, 317, 489, 522
DpnII	GATC	4 cut(s)	19, 315, 487, 520
Eco130I	CCWWGG	2 cut(s)	99, 114
Eco47I	GGWCC	2 cut(s)	118, 358
Eco91I	GGTNACC	1 cut(s)	575
EcoO65I	GGTNACC	1 cut(s)	575
EcoT14I	CCWWGG	2 cut(s)	99, 114
ErhI	CCWWGG	2 cut(s)	99, 114
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	5 cut(s)	48, 55, 226, 521, 584
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	5 cut(s)	44, 51, 222, 517, 580
FauI	CCCGC	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	594, 597
FokI	GGATG	3 cut(s)	23, 68, 344
Fsp4HI	GCNGC	2 cut(s)	594, 597
FspBI	CTAG	2 cut(s)	24, 155
GluI	GCNGC	2 cut(s)	594, 597
HgaI	GACGC	2 cut(s)	140, 461
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	5 cut(s)	48, 55, 226, 521, 584
HindIII	AAGCTT	2 cut(s)	251, 552
HinfI	GANTC	4 cut(s)	95, 196, 376, 499
HphI	GGTGA	4 cut(s)	400, 422, 497, 587
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	155, 200, 518
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	562, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
HpyF3I	CTNAG	1 cut(s)	143
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	5 cut(s)	48, 55, 226, 521, 584
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	19, 315, 487, 520
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	6 cut(s)	86, 258, 405, 429, 504, 558
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	24, 155
MaeIII	GTNAC	2 cut(s)	212, 575
MalI	GATC	4 cut(s)	21, 317, 489, 522
MboI	GATC	4 cut(s)	19, 315, 487, 520
MboII	GAAGA	6 cut(s)	80, 202, 205, 215, 290, 518
MflI	RGATCY	2 cut(s)	19, 315
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	104, 259, 280, 423
MlyI	GAGTC	2 cut(s)	104, 493
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	8 cut(s)	22, 69, 175, 229, 283, 304, 525, 532
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	3 cut(s)	275, 549, 588
MslI	CAYNNNNRTG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	139, 148, 590
NdeII	GATC	4 cut(s)	19, 315, 487, 520
NlaIII	CATG	5 cut(s)	48, 55, 226, 521, 584
NlaIV	GGNNCC	3 cut(s)	21, 80, 359
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	196, 376
PkrI	GCNGC	2 cut(s)	595, 598
PleI	GAGTC	2 cut(s)	103, 493
PpsI	GAGTC	2 cut(s)	103, 493
PspEI	GGTNACC	1 cut(s)	575
PspN4I	GGNNCC	3 cut(s)	21, 80, 359
PspPI	GGNCC	2 cut(s)	118, 358
PsuI	RGATCY	2 cut(s)	19, 315
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	275, 549, 588
SatI	GCNGC	2 cut(s)	594, 597
Sau3AI	GATC	4 cut(s)	19, 315, 487, 520
Sau96I	GGNCC	2 cut(s)	118, 358
SchI	GAGTC	2 cut(s)	104, 493
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	4 cut(s)	135, 240, 255, 556
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	2 cut(s)	118, 358
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	4 cut(s)	104, 259, 280, 423
SsiI	CCGC	2 cut(s)	531, 596
SspMI	CTAG	2 cut(s)	24, 155
StyI	CCWWGG	2 cut(s)	99, 114
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	348
TaqII	GACCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	104, 259, 280, 423
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	196, 376
Tru1I	TTAA	3 cut(s)	275, 549, 588
Tru9I	TTAA	3 cut(s)	275, 549, 588
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	81, 186, 381
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	118, 358
XapI	RAATTY	3 cut(s)	104, 280, 423
XbaI	TCTAGA	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	24, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.