Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006621.1

Orthogroup ID

OG0002757

Physical Location & Seq

Genomic Coordinates Forward (+)

15447 .. 17173

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006621.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggatgatagtgatgaggaccagagactaccccatcaccgcgagcccaaggaatttgtatccctggaccaacttgctgagcttggggttctcagctggcgtttagatgctgataactatgaaaccgatgaggagttgaagaagattcgtgaagaacgtggttactcctacatggacttctgtgaggtttgccctgaaaagcttccaaattatgaggagaagataaagaacttctttgaggaacatcttcacactgatgaggagatccgctatgctgtggcaggaagtggttattttgatgttagggactgtaacgaacgctggattcgtgtatgggtgaaaaagggtggaatgattgttttgcctgctggaatttatcaccgctttactttggacacagacaactacataaaggcaatgcggcttttcattggtgatccaatttggactccattcaatcgccctcatgatgatcttccagcaaggaaggagtacctcaatacttttgtgcataaagaagctggtgaacatgcagtttcagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009066 GO:0009987 GO:0010309 GO:0016491 GO:0016701 GO:0016702 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0051213 GO:0055114 GO:0071704 GO:1901564 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

ARD

Protein Analysis

181

Amino Acids

21.47

Weight (kDa)

4.97

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26400 AT2G26400 AT2G26400 AT2G26400 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14710 AT4G14716 AT4G14716
fragaria_vesca	FvH4_4g01140
malus_domestica	MD13G1199600.v1.1 MD16G1199600.v1.1
prunus_persica	Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1 Prupe.1G021100_v2.0.a1
pyrus_communis	pycom13g17320
rosa_chinensis	RchiOBHm_Chr4g0387711 RchiOBHm_Chr4g0387721
rosa_laevigata	RLG00000010098 RLG00000010099
rosa_multiflora	Rmu_sc0003953.1_g000022 Rmu_sc0006621.1_g000003 Rmu_sc0006621.1_g000005
rosa_roxburghii	Rroxscaffold_5G00334360 Rroxscaffold_5G00334370
rosa_rugosa	Rorug03G0312900
rosa_samantha	Rh4AG017900 Rh4AG018000 Rh4BG012800 Rh4BG012900 Rh4CG019100 Rh4CG019200 Rh4DG013700 Rh4DG013900
rosa_wichuraiana	Rw4G001170 Rw4G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	42
AciI	CCGC	4 cut(s)	40, 268, 382, 421
AclWI	GGATC	2 cut(s)	259, 431
AcsI	RAATTY	2 cut(s)	53, 372
AfaI	GTAC	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	139, 457
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	4 cut(s)	82, 96, 202, 521
AluI	AGCT	4 cut(s)	82, 96, 202, 521
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	259, 431
ApoI	RAATTY	2 cut(s)	53, 372
Asp700I	GAANNNNTTC	2 cut(s)	201, 246
AspS9I	GGNCC	2 cut(s)	19, 67
AsuHPI	GGTGA	5 cut(s)	29, 349, 371, 446, 536
AvaII	GGWCC	2 cut(s)	19, 67
BanII	GRGCYC	1 cut(s)	48
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	422
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	19, 67
BmgT120I	GGNCC	2 cut(s)	19, 67
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	48, 63
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	48, 63
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	69, 106
BseRI	GAGGAG	3 cut(s)	146, 230, 275
Bsh1236I	CGCG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	264, 436, 472
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	4 cut(s)	40, 268, 382, 421
BspCNI	CTCAG	2 cut(s)	70, 105
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	466
BspPI	GGATC	2 cut(s)	259, 431
BsrDI	GCAATG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	48, 63
BssMI	GATC	3 cut(s)	264, 436, 472
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	311
BstC8I	GCNNGC	3 cut(s)	44, 98, 366
BstDEI	CTNAG	2 cut(s)	78, 92
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	3 cut(s)	267, 439, 475
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	264, 436, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	44, 98, 366
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	19, 67
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	172, 467, 530
CviJI	RGCY	7 cut(s)	46, 82, 96, 202, 424, 521, 542
CviKI_1	RGCY	7 cut(s)	46, 82, 96, 202, 424, 521, 542
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	2 cut(s)	78, 92
DpnI	GATC	3 cut(s)	266, 438, 474
DpnII	GATC	3 cut(s)	264, 436, 472
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	19, 67
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	175, 470, 533
FaiI	YATR	9 cut(s)	120, 173, 213, 273, 334, 410, 468, 513, 531
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	171, 466, 529
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	422
GluI	GCNGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	175, 470, 533
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	145, 325, 448
HphI	GGTGA	5 cut(s)	29, 349, 371, 446, 536
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188III	TCNNGA	2 cut(s)	149, 467
Hpy8I	GTNNAC	1 cut(s)	527
HpyAV	CCTTC	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	511, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	78, 92
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	175, 470, 533
Kzo9I	GATC	3 cut(s)	264, 436, 472
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	161, 311
MalI	GATC	3 cut(s)	266, 438, 474
MboI	GATC	3 cut(s)	264, 436, 472
MboII	GAAGA	6 cut(s)	151, 154, 164, 232, 239, 467
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	4 cut(s)	53, 208, 372, 441
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	8 cut(s)	10, 124, 178, 208, 232, 253, 474, 506
MroXI	GAANNNNTTC	2 cut(s)	201, 246
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	3 cut(s)	264, 436, 472
NlaIII	CATG	3 cut(s)	175, 470, 533
NspI	RCATGY	1 cut(s)	533
PagI	TCATGA	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 325
PdmI	GAANNNNTTC	2 cut(s)	201, 246
PfeI	GAWTC	2 cut(s)	145, 325
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	19, 67
PsuI	RGATCY	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	255
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	3 cut(s)	264, 436, 472
Sau96I	GGNCC	2 cut(s)	19, 67
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	84, 98, 160, 189, 204, 498, 523
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	19, 67
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	4 cut(s)	53, 208, 372, 441
SsiI	CCGC	4 cut(s)	40, 268, 382, 421
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	160
TasI	AATT	4 cut(s)	53, 208, 372, 441
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	145, 325
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	135, 418
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	19, 67
XapI	RAATTY	2 cut(s)	53, 372
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	201, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.