Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Forward (+)

11443241 .. 11447171

Gene Structure 3931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGAGCAGCGAAGAATATCTGGGCATTAGCCAACGCCGAAGATGCAGCTAACGACGCCGAACAAATCCCTTATTCTTCGTTCGTCGTCGACACGTCTTTGCCTCTTCCTCTCATGATTCCTCGTATCATAGAGTTATGTAAAGATCTGTTCAAGAATTGGGGAGAGCTTGATGATTCACTCTTCTCTGTTGAGAGAGTATCTGGAGGCATTACAAATCTTTTGCTGAAGGTTTCTGTGAAAGAGGACACTAATAAAGAAGTGTCTGTTACAGTGAGACTGTATGGGCCTAACACTGAGTATGTTATTAACCGGGAGAGAGAGATTCTGGCTATCAAGTATCTCTCGGCTGCCGGATTTGGTGCCAAGTTGCTTGGTGGTTTTGGAAATGGCATGGTGCAATCGTTCATCAATGCAAGAACCTTAGAGCCATCAGACATGAGAGAGCCAAAGATTGCTGCACAAATTGCCAGAGAACTTGGAAAGTTTCATAAAGTGGACATACCAGGTTCCAAGGAACCTCAGCTGTGGGTTGATATCTTGAAGTTCTATGAAAAAGCATCTACTCTTACGTTTGAAGAACCTGATAAGCAGAAGCTCTTTGAGACTATTTCGTTTGAAGAACTCCACAAAGAAATTATTGAGCTAAGGGAATTCACAGGCTTACTTAACGCACCTGTGGTGTTTGCTCATAACGATTTACTATCAGGAAACTTCATGCTGAATGATGAAGAAGAGAAACTATACTTGATTGATTTCGAGTATGGATCATACAACTATAGAGGCTTTGACATCGGAAATCACTTCAATGAATATGCAGGATACGACTGTGATTACAGCCTGTACCCAAGTAAAGAGGAACAATATCATTTCATCAAGCATTACTTACAGCCAGACAAACCAGACGAGGTCAGTATCGCTGAAGTAGAATCAGTCTTTGTAGAGACAGATGCGTATAAATTAGCATCTCATTTGTACTGGGCAATATGGGCGATCATCCAGGCAAGGATGTCTCCCATTGAGTTTGAATATTTGGGTTACTTCTTTTTGCGGTACAATGAATACAAGAAGCAGAAGCCACTTACTTTTTCACTTGTTACATCTCACCTCTCAGCATCGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

374

Amino Acids

42.86

Weight (kDa)

4.88

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	64 - 355	1.7e-101	Choline/ethanolamine kinase
APH	PF01636	65 - 271	4.8e-12	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	1 cut(s)	1051
AclWI	GGATC	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	2 cut(s)	248, 942
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	3 cut(s)	845, 977, 1055
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	6 cut(s)	154, 544, 578, 620, 808, 1028
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	2 cut(s)	505, 999
AluBI	AGCT	5 cut(s)	50, 169, 526, 598, 646
AluI	AGCT	5 cut(s)	50, 169, 526, 598, 646
Alw26I	GTCTC	4 cut(s)	271, 599, 938, 1017
AlwI	GGATC	1 cut(s)	775
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	8, 47, 350, 458
ApoI	RAATTY	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	1097
BaeI	ACNNNNGTAYC	2 cut(s)	814, 847
BanI	GGYRCC	1 cut(s)	362
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	20, 59, 337, 445
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	2 cut(s)	507, 1001
BciVI	GTATCC	1 cut(s)	815
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	4 cut(s)	271, 599, 938, 1017
BfmI	CTRYAG	2 cut(s)	778, 1121
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	4 cut(s)	9, 48, 351, 459
BlsI	GCNGC	4 cut(s)	10, 49, 352, 460
Bme1390I	CCNGG	3 cut(s)	314, 507, 1001
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	364, 511, 519
BmrFI	CCNGG	3 cut(s)	314, 507, 1001
BmrI	ACTGGG	1 cut(s)	988
BmsI	GCATC	4 cut(s)	34, 569, 940, 974
BmuI	ACTGGG	1 cut(s)	988
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	2 cut(s)	522, 647
BpuMI	CCSGG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	983
BseBI	CCWGG	2 cut(s)	507, 1001
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	996, 1014
BseMII	CTCAG	3 cut(s)	288, 536, 1125
BseNI	ACTGG	1 cut(s)	983
BseXI	GCAGC	4 cut(s)	20, 59, 337, 445
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	362
BsiSI	CCGG	2 cut(s)	313, 354
BsmAI	GTCTC	4 cut(s)	271, 599, 938, 1017
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	145, 767, 993
BspACI	CCGC	1 cut(s)	1051
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	289, 535, 1124
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	364, 511, 519
BspPI	GGATC	1 cut(s)	775
BspT107I	GGYRCC	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	983
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	145, 767, 993
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	2 cut(s)	507, 1001
Bst4CI	ACNGT	3 cut(s)	274, 282, 830
Bst6I	CTCTTC	3 cut(s)	111, 188, 729
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstDEI	CTNAG	5 cut(s)	297, 424, 522, 647, 1111
BstF5I	GGATG	2 cut(s)	996, 1014
BstKTI	GATC	3 cut(s)	148, 770, 996
BstMAI	GTCTC	4 cut(s)	271, 599, 938, 1017
BstMBI	GATC	3 cut(s)	145, 767, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 56, 467, 989
BstNI	CCWGG	2 cut(s)	507, 1001
BstSCI	CCNGG	3 cut(s)	312, 505, 999
BstSFI	CTRYAG	2 cut(s)	778, 1121
BstV1I	GCAGC	4 cut(s)	20, 59, 337, 445
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	1101
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	996, 1014
BtsIMutI	CAGTG	2 cut(s)	279, 294
CciI	TCATGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	3 cut(s)	844, 976, 1054
CviAII	CATG	4 cut(s)	115, 394, 439, 718
CviQI	GTAC	3 cut(s)	844, 976, 1054
DdeI	CTNAG	5 cut(s)	297, 424, 522, 647, 1111
DpnI	GATC	3 cut(s)	147, 769, 995
DpnII	GATC	3 cut(s)	145, 767, 993
Eam1104I	CTCTTC	3 cut(s)	111, 188, 729
EarI	CTCTTC	3 cut(s)	111, 188, 729
Eco130I	CCWWGG	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	538
Eco57I	CTGAAG	2 cut(s)	248, 942
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	505, 999
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	118, 397, 442, 721
FalI	AAGNNNNNCTT	2 cut(s)	869, 901
FatI	CATG	4 cut(s)	114, 393, 438, 717
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	9, 48, 351, 459
FokI	GGATG	2 cut(s)	983, 1021
Fsp4HI	GCNGC	4 cut(s)	9, 48, 351, 459
GluI	GCNGC	4 cut(s)	9, 48, 351, 459
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	313, 354
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	118, 397, 442, 721
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	118, 176, 325, 929
HpaII	CCGG	2 cut(s)	313, 354
HphI	GGTGA	1 cut(s)	1097
Hpy166II	GTNNAC	2 cut(s)	91, 499
Hpy188I	TCNGA	2 cut(s)	436, 797
Hpy188III	TCNNGA	5 cut(s)	115, 154, 204, 541, 708
Hpy8I	GTNNAC	2 cut(s)	91, 499
Hpy99I	CGWCG	3 cut(s)	59, 89, 92
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	3 cut(s)	274, 282, 830
HpyCH4IV	ACGT	2 cut(s)	95, 572
HpyCH4V	TGCA	5 cut(s)	47, 400, 416, 461, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 56, 467, 989
HpyF3I	CTNAG	5 cut(s)	297, 424, 522, 647, 1111
HpySE526I	ACGT	2 cut(s)	95, 572
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	118, 397, 442, 721
Kzo9I	GATC	3 cut(s)	145, 767, 993
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	4 cut(s)	20, 59, 337, 445
LweI	GCATC	4 cut(s)	34, 569, 940, 974
MabI	ACCWGGT	1 cut(s)	505
MaeII	ACGT	2 cut(s)	95, 572
MaeIII	GTNAC	3 cut(s)	268, 1037, 1096
MalI	GATC	3 cut(s)	147, 769, 995
MboI	GATC	3 cut(s)	145, 767, 993
MboII	GAAGA	9 cut(s)	25, 53, 69, 98, 175, 590, 632, 743, 746
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	5 cut(s)	157, 465, 636, 653, 959
MseI	TTAA	2 cut(s)	309, 669
MslI	CAYNNNNRTG	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	2 cut(s)	313, 354
MspR9I	CCNGG	3 cut(s)	314, 507, 1001
MvaI	CCWGG	2 cut(s)	507, 1001
MwoI	GCNNNNNNNGC	4 cut(s)	44, 56, 467, 989
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	145, 767, 993
NlaIII	CATG	4 cut(s)	118, 397, 442, 721
NlaIV	GGNNCC	3 cut(s)	364, 511, 519
NmeAIII	GCCGAG	1 cut(s)	326
PagI	TCATGA	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	118, 176, 325, 929
PflFI	GACNNNGTC	1 cut(s)	908
PkrI	GCNGC	4 cut(s)	10, 49, 352, 460
Psp6I	CCWGG	2 cut(s)	505, 999
PspGI	CCWGG	2 cut(s)	505, 999
PspN4I	GGNNCC	3 cut(s)	364, 511, 519
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	145
PsyI	GACNNNGTC	1 cut(s)	908
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	3 cut(s)	845, 977, 1055
RsaNI	GTAC	3 cut(s)	844, 976, 1054
RseI	CAYNNNNRTG	1 cut(s)	807
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	309, 669
SatI	GCNGC	4 cut(s)	9, 48, 351, 459
Sau3AI	GATC	3 cut(s)	145, 767, 993
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	314, 507, 1001
SexAI	ACCWGGT	1 cut(s)	505
SfaNI	GCATC	4 cut(s)	34, 569, 940, 974
SfcI	CTRYAG	2 cut(s)	778, 1121
SmiMI	CAYNNNNRTG	1 cut(s)	807
Sse9I	AATT	5 cut(s)	157, 465, 636, 653, 959
SsiI	CCGC	1 cut(s)	1051
SspI	AATATT	1 cut(s)	1031
StyD4I	CCNGG	3 cut(s)	312, 505, 999
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	274, 282, 830
TaiI	ACGT	2 cut(s)	98, 575
TaqI	TCGA	2 cut(s)	90, 759
TasI	AATT	5 cut(s)	157, 465, 636, 653, 959
TatI	WGTACW	1 cut(s)	975
TfiI	GAWTC	4 cut(s)	118, 176, 325, 929
Tru1I	TTAA	2 cut(s)	309, 669
Tru9I	TTAA	2 cut(s)	309, 669
TscAI	CASTG	2 cut(s)	279, 301
TseI	GCWGC	4 cut(s)	8, 47, 350, 458
TspDTI	ATGAA	8 cut(s)	397, 479, 567, 706, 744, 825, 862, 1074
TspRI	CASTG	2 cut(s)	279, 301
Tth111I	GACNNNGTC	1 cut(s)	908
XapI	RAATTY	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.