Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Forward (+)

1776324 .. 1779937

Gene Structure 3614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02820.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCGGTTAAGCTGGATTCAGCAAAAAAAAAAAAAAAAAAGAAGAAGAAAACACAGAGAAATGGGAGCCGTGAAGAACATCTGGAACGCCATGGAAGTAGCTGAGCAAGCTTCTGATTGCTCCACCTCTCAGATCCCTTCATCTTCCCTCTCCATCAACCCCTCCCTCCCTCTCTCTGACATCTCGCCTCTCATCATAGAGTTGTGCAAGGATCTGTTTAAGAAATGGTCAAATTTGGAGAACTCTCGCTTCTCCGTGGAGACGGTTTCGGGCGGCATCACAAATCTACTGCTGAAGGTGACTGTCAAGGAAGAGAATGGAAATACCGTGTCTGTGACAGTTAGGTTGTACGGGCCTAACACCGATTATGTTATCAATAGGGAACGCGAACTGCAGGCAATCAAATACCTCTCGGCTGCAGGATTTGGTGCAAATTTACTGGGAGTTTTTGCGAATGGGATGGTGCAATCTTTTATCAATGCACGTACGTTAGTCCCATCAGACATGAGAAATCCAAAGCTGGCTGCCGATATTGCCAAGGAACTGCGCAGATTCCATGAAGTGGAAATTCCAGGTTCCAAGGAACCTCAATTGTGGATTGACATGTTCAAGTTCTTTGAGAAAGCATCTGCTCTGGAATTTGACGACAATCAGAAGCAGAAAGTTTATAACACCATTTCATTTAGTGTAGTTCACAATGAAATGATTGAGCTCAAGGAATTGACGAGCCTTTTGAACGCTCCAGTCGTTTTTGCTCACAATGACTTGCTTTCCGGAAATATAATGGTTAATGATGAAGAAGATAAACTGTACTTCATTGATTTTGAGTACGGATCATACAATTATAGAGGCTTTGACATCGGGAATCACTTCAATGAATATGCAGGCTATGAATGCGACTATAGTTTATGCCCGAATAAGGAAGAACAATACCACTTCTTGAGGCATTATATACAACCTACCAATCCACATGAGGTATCAGACAAGGATCTTGAAGCTCTGTATGTTGAGGCAAATACATATATGTTAGCTTCTCACTTGTATTGGGCTTTATGGGGAATAATCCAGGCAAAGTTTTCTCCGATCAATTTCGACTACCTCGGTTACTTCTTCCTGCGATACAATGAATACAAAACGCAGAAGGAAAGAAGCTTCTCCATGGCAAGATCACATCTCTTGCAATCTGAGACCGGCTTGAACATGAATGCGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

405

Amino Acids

46.65

Weight (kDa)

6.11

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
Acc16I	TGCGCA	2 cut(s)	548, 1209
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccII	CGCG	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	773
AciI	CCGC	2 cut(s)	4, 273
AclWI	GGATC	4 cut(s)	127, 219, 841, 996
AcsI	RAATTY	4 cut(s)	232, 433, 567, 638
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	4 cut(s)	350, 487, 812, 830
AfiI	CCNNNNNNNGG	2 cut(s)	562, 919
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	610, 736, 874, 995, 1198
AjnI	CCWGG	2 cut(s)	571, 1065
AluBI	AGCT	8 cut(s)	12, 101, 110, 520, 712, 998, 1031, 1152
AluI	AGCT	8 cut(s)	12, 101, 110, 520, 712, 998, 1031, 1152
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	2 cut(s)	254, 1181
AlwI	GGATC	4 cut(s)	127, 219, 841, 996
Aor13HI	TCCGGA	1 cut(s)	773
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	416, 524
ApoI	RAATTY	4 cut(s)	232, 433, 567, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	715, 747
Asp700I	GAANNNNTTC	1 cut(s)	869
AspLEI	GCGC	2 cut(s)	549, 1210
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	714
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	403, 511
BccI	CCATC	3 cut(s)	161, 454, 505
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	573, 1067
BcoDI	GTCTC	2 cut(s)	254, 1181
BfmI	CTRYAG	3 cut(s)	392, 417, 901
BisI	GCNGC	3 cut(s)	274, 417, 525
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	3 cut(s)	275, 418, 526
Bme1390I	CCNGG	2 cut(s)	573, 1067
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	3 cut(s)	67, 577, 585
BmrFI	CCNGG	2 cut(s)	573, 1067
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	2 cut(s)	285, 635
BmuI	ACTGGG	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	726
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	698, 961
BsaAI	YACGTR	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	1181
BsaJI	CCNNGG	6 cut(s)	90, 255, 537, 579, 1099, 1158
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	2 cut(s)	562, 919
Bse118I	RCCGGY	1 cut(s)	1190
Bse1I	ACTGG	2 cut(s)	444, 743
BseAI	TCCGGA	1 cut(s)	773
BseBI	CCWGG	2 cut(s)	573, 1067
BseDI	CCNNGG	6 cut(s)	90, 255, 537, 579, 1099, 1158
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	562, 919
BseMII	CTCAG	3 cut(s)	93, 143, 1176
BseNI	ACTGG	2 cut(s)	444, 743
BseXI	GCAGC	2 cut(s)	403, 511
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	774, 1191
BsiWI	CGTACG	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	2 cut(s)	562, 919
BsmAI	GTCTC	2 cut(s)	254, 1181
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	2 cut(s)	899, 1210
BsnI	GGCC	1 cut(s)	355
Bso31I	GGTCTC	1 cut(s)	1181
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	1 cut(s)	773
Bsp143I	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
Bsp1720I	GCTNAGC	1 cut(s)	102
Bsp19I	CCATGG	2 cut(s)	90, 1158
BspACI	CCGC	2 cut(s)	4, 273
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	3 cut(s)	94, 142, 1177
BspEI	TCCGGA	1 cut(s)	773
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	67, 577, 585
BspMAI	CTGCAG	2 cut(s)	396, 421
BspPI	GGATC	4 cut(s)	127, 219, 841, 996
BspTNI	GGTCTC	1 cut(s)	1181
BsrFI	RCCGGY	1 cut(s)	1190
BsrI	ACTGG	2 cut(s)	444, 743
BssAI	RCCGGY	1 cut(s)	1190
BssECI	CCNNGG	6 cut(s)	90, 255, 537, 579, 1099, 1158
BssMI	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
BssT1I	CCWWGG	4 cut(s)	90, 537, 579, 1158
Bst2UI	CCWGG	2 cut(s)	573, 1067
Bst4CI	ACNGT	5 cut(s)	265, 304, 328, 340, 810
Bst6I	CTCTTC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	108, 396, 522, 886
BstDEI	CTNAG	3 cut(s)	102, 129, 1185
BstDSI	CCRYGG	3 cut(s)	90, 255, 1158
BstF5I	GGATG	1 cut(s)	465
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	2 cut(s)	549, 1210
BstKTI	GATC	6 cut(s)	135, 214, 836, 991, 1086, 1169
BstMAI	GTCTC	2 cut(s)	254, 1181
BstMBI	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 533, 894
BstNI	CCWGG	2 cut(s)	573, 1067
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	571, 1065
BstSFI	CTRYAG	3 cut(s)	392, 417, 901
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	403, 511
BstX2I	RGATCY	3 cut(s)	132, 211, 988
BstYI	RGATCY	3 cut(s)	132, 211, 988
BsuRI	GGCC	1 cut(s)	355
BtgI	CCRYGG	3 cut(s)	90, 255, 1158
BtsCI	GGATG	1 cut(s)	465
Cac8I	GCNNGC	4 cut(s)	108, 396, 522, 886
CfoI	GCGC	2 cut(s)	549, 1210
Cfr10I	RCCGGY	1 cut(s)	1190
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	4 cut(s)	349, 486, 811, 829
CviAII	CATG	7 cut(s)	91, 505, 557, 604, 971, 1159, 1201
CviQI	GTAC	4 cut(s)	349, 486, 811, 829
DdeI	CTNAG	3 cut(s)	102, 129, 1185
DpnI	GATC	6 cut(s)	134, 213, 835, 990, 1085, 1168
DpnII	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	4 cut(s)	90, 537, 579, 1158
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	1181
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	571, 1065
EcoT14I	CCWWGG	4 cut(s)	90, 537, 579, 1158
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	4 cut(s)	90, 537, 579, 1158
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	7 cut(s)	94, 508, 560, 607, 974, 1162, 1204
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	7 cut(s)	90, 504, 556, 603, 970, 1158, 1200
Fnu4HI	GCNGC	3 cut(s)	274, 417, 525
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	3 cut(s)	274, 417, 525
FspI	TGCGCA	2 cut(s)	548, 1209
GlaI	GCGC	2 cut(s)	548, 1209
GluI	GCNGC	3 cut(s)	274, 417, 525
GsuI	CTGGAG	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	2 cut(s)	774, 1191
HhaI	GCGC	2 cut(s)	549, 1210
Hin1II	CATG	7 cut(s)	94, 508, 560, 607, 974, 1162, 1204
Hin6I	GCGC	2 cut(s)	547, 1208
HinP1I	GCGC	2 cut(s)	547, 1208
HindIII	AAGCTT	2 cut(s)	108, 1150
HinfI	GANTC	3 cut(s)	16, 552, 865
HpaII	CCGG	2 cut(s)	774, 1191
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	8 cut(s)	115, 132, 178, 502, 654, 982, 1083, 1186
Hpy188III	TCNNGA	6 cut(s)	82, 635, 774, 862, 940, 992
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	3 cut(s)	147, 289, 1135
HpyCH4III	ACNGT	5 cut(s)	265, 304, 328, 340, 810
HpyCH4IV	ACGT	2 cut(s)	484, 488
HpyCH4V	TGCA	8 cut(s)	207, 394, 419, 431, 466, 482, 884, 1180
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 533, 894
HpyF3I	CTNAG	3 cut(s)	102, 129, 1185
HpySE526I	ACGT	2 cut(s)	484, 488
Hsp92II	CATG	7 cut(s)	94, 508, 560, 607, 974, 1162, 1204
HspAI	GCGC	2 cut(s)	547, 1208
Kpn2I	TCCGGA	1 cut(s)	773
Kzo9I	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
LmnI	GCTCC	3 cut(s)	65, 125, 745
Lsp1109I	GCAGC	2 cut(s)	403, 511
LweI	GCATC	2 cut(s)	285, 635
MaeII	ACGT	2 cut(s)	484, 488
MaeIII	GTNAC	3 cut(s)	298, 334, 1103
MalI	GATC	6 cut(s)	134, 213, 835, 990, 1085, 1168
MboI	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
MboII	GAAGA	9 cut(s)	54, 57, 85, 135, 323, 809, 812, 935, 1102
MfeI	CAATTG	1 cut(s)	590
MflI	RGATCY	3 cut(s)	132, 211, 988
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	8 cut(s)	232, 433, 567, 590, 638, 719, 841, 1087
MroI	TCCGGA	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	3 cut(s)	8, 219, 789
MslI	CAYNNNNRTG	1 cut(s)	873
MspI	CCGG	2 cut(s)	774, 1191
MspR9I	CCNGG	2 cut(s)	573, 1067
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	2 cut(s)	899, 1210
MvaI	CCWGG	2 cut(s)	573, 1067
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	107, 533, 894
NcoI	CCATGG	2 cut(s)	90, 1158
NdeII	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
NlaIII	CATG	7 cut(s)	94, 508, 560, 607, 974, 1162, 1204
NlaIV	GGNNCC	3 cut(s)	67, 577, 585
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	298, 334
NsbI	TGCGCA	2 cut(s)	548, 1209
NspI	RCATGY	1 cut(s)	607
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	2 cut(s)	899, 1210
PdmI	GAANNNNTTC	1 cut(s)	869
PfeI	GAWTC	3 cut(s)	16, 552, 865
Pfl23II	CGTACG	1 cut(s)	485
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	3 cut(s)	275, 418, 526
Ppu21I	YACGTR	1 cut(s)	485
PscI	ACATGT	1 cut(s)	603
PsiI	TTATAA	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	571, 1065
PspGI	CCWGG	2 cut(s)	571, 1065
PspLI	CGTACG	1 cut(s)	485
PspN4I	GGNNCC	3 cut(s)	67, 577, 585
PspPI	GGNCC	1 cut(s)	353
PstI	CTGCAG	2 cut(s)	396, 421
PsuI	RGATCY	3 cut(s)	132, 211, 988
RsaI	GTAC	4 cut(s)	350, 487, 812, 830
RsaNI	GTAC	4 cut(s)	349, 486, 811, 829
RseI	CAYNNNNRTG	1 cut(s)	873
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	8, 219, 789
SatI	GCNGC	3 cut(s)	274, 417, 525
Sau3AI	GATC	6 cut(s)	132, 211, 833, 988, 1083, 1166
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	573, 1067
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	285, 635
SfcI	CTRYAG	3 cut(s)	392, 417, 901
SmiMI	CAYNNNNRTG	1 cut(s)	873
SmlI	CTYRAG	2 cut(s)	713, 940
SmoI	CTYRAG	2 cut(s)	713, 940
Sse9I	AATT	8 cut(s)	232, 433, 567, 590, 638, 719, 841, 1087
SsiI	CCGC	2 cut(s)	4, 273
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	2 cut(s)	571, 1065
StyI	CCWWGG	4 cut(s)	90, 537, 579, 1158
TaaI	ACNGT	5 cut(s)	265, 304, 328, 340, 810
TaiI	ACGT	2 cut(s)	487, 491
TaqI	TCGA	1 cut(s)	1092
TasI	AATT	8 cut(s)	232, 433, 567, 590, 638, 719, 841, 1087
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	16, 552, 865
Tru1I	TTAA	3 cut(s)	8, 219, 789
Tru9I	TTAA	3 cut(s)	8, 219, 789
TseFI	GTSAC	2 cut(s)	298, 334
TseI	GCWGC	2 cut(s)	416, 524
Tsp45I	GTSAC	2 cut(s)	298, 334
TspDTI	ATGAA	9 cut(s)	129, 573, 669, 714, 805, 810, 891, 906, 1140
TspGWI	ACGGA	2 cut(s)	244, 846
Van91I	CCANNNNNTGG	1 cut(s)	562
XapI	RAATTY	4 cut(s)	232, 433, 567, 638
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.