Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Reverse (-)

3218448 .. 3220302

Gene Structure 1855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGAAATCCAAAGCTGGCCGCCAAAATTGCGAGGGAACTACGCAGATTCCATCAGGTGGAAATTCCAGGTTCTAAGGAACCTCAGCTGTGGATTGACATGTTCAAGTTCTACGAGAAAGCCTCTTCTCTTGAATTTGATGACAGCGAGAAGCAGAAAATCTACAAAACTATTTCATTTAGTGAAGTTTACAATGAAATCGTTGAGCTCAAGGAATTGACTAGCCATTTTAATGCTCCGGTGGTTTTTTCTCACAATGACTTGCTTTCTGGAAATATAATGGCTAATGACGAAGAAGAGAAACTCTACTTCATTGATTTCGAGTATGGATCATACAATTACAGAGGCTTTGACATCGGGAATCACTTTAATGAATATGCAGGCTATGAATGTGACTACAGCTTATACCCAACCAAGGAAGAACAATACCATTTCTTCAGGCATTATTTGGGACCTGACAAACCACAGGAGGTATCAGACAAAGATCTGGAAGCTCTCTATGTTGAGGCAAATACATATATGTTAGCTTCGCACTTGTACTGGGCTTTATGGGGAATAGTCCACGCGAAGTTTTCTCCAATTAAGTTTGATTATCTCGGTTACTTCTTCCTGCGATACAATGAATACAAAAAGCAGAAGGAAAAGTGCTTATCGTTGGCAAGATCATTCCTGTCACGATCTGAGGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

230

Amino Acids

27.39

Weight (kDa)

5.54

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	1 - 209	3.5e-66	Choline/ethanolamine kinase
APH	PF01636	4 - 128	2.3e-09	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	1 cut(s)	566
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	2 cut(s)	63, 134
AcuI	CTGAAG	1 cut(s)	421
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	2 cut(s)	58, 415
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	106, 134
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	6 cut(s)	16, 88, 208, 402, 494, 527
AluI	AGCT	6 cut(s)	16, 88, 208, 402, 494, 527
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	2 cut(s)	63, 134
AspS9I	GGNCC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	69
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	397
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	81, 453
BmrFI	CCNGG	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	550
BmuI	ACTGGG	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 415
Bse1I	ACTGG	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	414
BseLI	CCNNNNNNNGG	2 cut(s)	58, 415
BseMII	CTCAG	2 cut(s)	98, 672
BseNI	ACTGG	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	58, 415
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	329, 484, 662, 677
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	97, 673
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	81, 453
BspPI	GGATC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	545
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	4 cut(s)	329, 484, 662, 677
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	130, 291
BstC8I	GCNNGC	2 cut(s)	18, 382
BstDEI	CTNAG	3 cut(s)	75, 84, 681
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	4 cut(s)	332, 487, 665, 680
BstMBI	GATC	4 cut(s)	329, 484, 662, 677
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	20
Cac8I	GCNNGC	2 cut(s)	18, 382
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	3 cut(s)	75, 84, 681
DpnI	GATC	4 cut(s)	331, 486, 664, 679
DpnII	GATC	4 cut(s)	329, 484, 662, 677
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	130, 291
EarI	CTCTTC	2 cut(s)	130, 291
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	452
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	2 cut(s)	48, 361
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	190, 562
Hpy188I	TCNGA	2 cut(s)	478, 682
Hpy188III	TCNNGA	5 cut(s)	131, 270, 358, 488, 675
Hpy8I	GTNNAC	2 cut(s)	190, 562
HpyAV	CCTTC	1 cut(s)	631
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	3 cut(s)	75, 84, 681
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	329, 484, 662, 677
LmnI	GCTCC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	392, 599, 672
MalI	GATC	4 cut(s)	331, 486, 664, 679
MboI	GATC	4 cut(s)	329, 484, 662, 677
MboII	GAAGA	6 cut(s)	117, 305, 308, 427, 431, 598
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	6 cut(s)	27, 63, 134, 215, 337, 579
MnlI	CCTC	7 cut(s)	27, 93, 133, 338, 463, 499, 676
MseI	TTAA	3 cut(s)	231, 369, 582
MslI	CAYNNNNRTG	2 cut(s)	231, 369
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	4 cut(s)	329, 484, 662, 677
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	81, 453
NmuCI	GTSAC	2 cut(s)	392, 672
NspI	RCATGY	1 cut(s)	103
PciI	ACATGT	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	48, 361
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	452
PscI	ACATGT	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	81, 453
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	2 cut(s)	231, 369
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	231, 369, 582
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	4 cut(s)	329, 484, 662, 677
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	2 cut(s)	231, 369
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	27, 63, 134, 215, 337, 579
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	414
TaqI	TCGA	1 cut(s)	321
TasI	AATT	6 cut(s)	27, 63, 134, 215, 337, 579
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	48, 361
Tru1I	TTAA	3 cut(s)	231, 369, 582
Tru9I	TTAA	3 cut(s)	231, 369, 582
TseFI	GTSAC	2 cut(s)	392, 672
Tsp45I	GTSAC	2 cut(s)	392, 672
TspDTI	ATGAA	6 cut(s)	165, 210, 301, 387, 402, 636
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	63, 134
XceI	RCATGY	1 cut(s)	103
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.