Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Reverse (-)

89321882 .. 89324854

Gene Structure 2973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAGCGGTGAAGAACATCTGGAACGGGAGGAAAGAGTTGTGCAAGGATCTTTTTGAGAACTGGTCAAATTTGGACGATTCTCGCTTCTCGGTCGAGACGGTTTCCGGCGGCATCACGAATCTGTTACTGAAGGCTACTGTGAAGGAGGAAGATGGAAATGACGTGTCTGTAACAGTCAGATTGTATGGCCCTAACACCGATTACGTTATCAATCGCGAAAGAGAATTGCAGGCAATCAAGTACCTCTCGGCTGCAGGGTTTGGTGCAAATTTGCTTGCAGTTTTTGGAAATGGAATGGTGCAGTCGTTTATAAATGCACGTACACTTGTCCCATTAGACATGAGAAATCCAAAGCTGGCCGCCGAAATTGCCAGGGAACTACGCAGATTCCATCAGGTGGAAATTCCAGGTTCTAAGGAACCGCAGCTGTGGATTGACACGTTCAAGTTCTACGAGAAAGCCTCTTCTCTTGAATTTGATGACCATGAGAAGCAGAAAATCTACAAAACTATTTCATTTAGTGAAGTTTACAATGAAATCATTGAGCTCAAGATGCCTCTGCTGATAATGGAACAGGAATTGACTAGCCATTTTAATGCTCCAGTGGTTTTTTCTCACAATGACTTGCTTTCTGGAAATATAATGGTTAATGACGAAGAAGAGAAACTCTACTTCATTGATTTCGAGTATGGATCATACAATTACAGAGGCTTTGACATCGGGAATCACTTTAATGAATATGCAGGCTATGAATGTGACTACAGCTTATACCCAACCAAGGATGAACAATACCATTTCTTCAGGCATTATTTGGGACCTGACAAACCACAGGAGGTATCAGACAAAGATCTGGAAGCTCTCTATGTTGAGGCAAATACATATATGTTGGCTTCGCACTTGTACTGGGCTTTATGGGGTATAGTCCAGGCGAAGTTTTCTCCAATCAAGTTTGATTATCTCGGTTACTTCTTCCTGCGATACAACGAATACAAAAAGCAGAAGGAGAAGTGCTTATCATTGGCAAGATCATTCCTGTCACGATCTGAGGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

352

Amino Acids

40.95

Weight (kDa)

5.2

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	32 - 331	6.1e-91	Choline/ethanolamine kinase
APH	PF01636	53 - 247	6.1e-12	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccBSI	CCGCTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	219
AciI	CCGC	4 cut(s)	8, 111, 363, 425
AclWI	GGATC	2 cut(s)	57, 703
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	4 cut(s)	70, 271, 405, 476
AcuI	CTGAAG	2 cut(s)	152, 787
AfaI	GTAC	3 cut(s)	245, 325, 905
AfiI	CCNNNNNNNGG	2 cut(s)	400, 781
AflIII	ACRYGT	2 cut(s)	165, 441
AgsI	TTSAA	2 cut(s)	448, 476
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	374, 409, 927
AluBI	AGCT	5 cut(s)	358, 430, 550, 768, 860
AluI	AGCT	5 cut(s)	358, 430, 550, 768, 860
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	57, 703
AoxI	GGCC	2 cut(s)	190, 360
ApeKI	GCWGC	2 cut(s)	254, 427
ApoI	RAATTY	4 cut(s)	70, 271, 405, 476
AspS9I	GGNCC	2 cut(s)	191, 818
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	818
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	2 cut(s)	241, 439
BccI	CCATC	2 cut(s)	149, 402
BciT130I	CCWGG	3 cut(s)	376, 411, 929
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	255, 763
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	4 cut(s)	112, 255, 363, 428
BlsI	GCNGC	4 cut(s)	113, 256, 364, 429
Bme1390I	CCNGG	3 cut(s)	376, 411, 929
Bme18I	GGWCC	1 cut(s)	818
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	2 cut(s)	191, 818
BmiI	GGNNCC	2 cut(s)	423, 819
BmrFI	CCNGG	3 cut(s)	376, 411, 929
BmrI	ACTGGG	1 cut(s)	916
BmsI	GCATC	2 cut(s)	123, 546
BmuI	ACTGGG	1 cut(s)	916
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
BpmI	CTGGAG	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	375, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 781
Bse1I	ACTGG	3 cut(s)	68, 605, 911
BseBI	CCWGG	3 cut(s)	376, 411, 929
BseDI	CCNNGG	2 cut(s)	375, 780
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	2 cut(s)	400, 781
BseMII	CTCAG	1 cut(s)	1038
BseNI	ACTGG	3 cut(s)	68, 605, 911
BseXI	GCAGC	2 cut(s)	241, 439
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	192, 362
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	317, 831
BslI	CCNNNNNNNGG	2 cut(s)	400, 781
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	317, 831
BsnI	GGCC	2 cut(s)	192, 362
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	49, 695, 850, 1028, 1043
Bsp68I	TCGCGA	1 cut(s)	219
BspACI	CCGC	4 cut(s)	8, 111, 363, 425
BspANI	GGCC	2 cut(s)	192, 362
BspCNI	CTCAG	1 cut(s)	1039
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	423, 819
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	2 cut(s)	57, 703
BsrBI	CCGCTC	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	68, 605, 911
BssECI	CCNNGG	2 cut(s)	375, 780
BssMI	GATC	5 cut(s)	49, 695, 850, 1028, 1043
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	3 cut(s)	376, 411, 929
Bst4CI	ACNGT	3 cut(s)	103, 142, 178
Bst6I	CTCTTC	2 cut(s)	472, 657
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	4 cut(s)	234, 279, 360, 748
BstDEI	CTNAG	2 cut(s)	417, 1047
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	1 cut(s)	219
BstKTI	GATC	5 cut(s)	52, 698, 853, 1031, 1046
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	5 cut(s)	49, 695, 850, 1028, 1043
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 556
BstNI	CCWGG	3 cut(s)	376, 411, 929
BstSCI	CCNGG	3 cut(s)	374, 409, 927
BstSFI	CTRYAG	2 cut(s)	255, 763
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	241, 439
BstX2I	RGATCY	2 cut(s)	49, 850
BstYI	RGATCY	2 cut(s)	49, 850
BsuRI	GGCC	2 cut(s)	192, 362
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	612
BtuMI	TCGCGA	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	234, 279, 360, 748
Cfr13I	GGNCC	2 cut(s)	191, 818
Csp6I	GTAC	3 cut(s)	244, 324, 904
CviAII	CATG	2 cut(s)	343, 488
CviQI	GTAC	3 cut(s)	244, 324, 904
DdeI	CTNAG	2 cut(s)	417, 1047
DpnI	GATC	5 cut(s)	51, 697, 852, 1030, 1045
DpnII	GATC	5 cut(s)	49, 695, 850, 1028, 1043
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	472, 657
EarI	CTCTTC	2 cut(s)	472, 657
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	818
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	152, 787
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	3 cut(s)	374, 409, 927
EcoT14I	CCWWGG	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	780
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	346, 491
FaqI	GGGAC	2 cut(s)	317, 831
FatI	CATG	2 cut(s)	342, 487
Fnu4HI	GCNGC	4 cut(s)	112, 255, 363, 428
FokI	GGATG	1 cut(s)	797
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	4 cut(s)	112, 255, 363, 428
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	4 cut(s)	112, 255, 363, 428
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	2 cut(s)	192, 362
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	2 cut(s)	346, 491
HinfI	GANTC	4 cut(s)	80, 121, 390, 727
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	326, 532
Hpy188I	TCNGA	3 cut(s)	182, 844, 1048
Hpy8I	GTNNAC	2 cut(s)	326, 532
HpyAV	CCTTC	3 cut(s)	127, 139, 997
HpyCH4III	ACNGT	3 cut(s)	103, 142, 178
HpyCH4IV	ACGT	4 cut(s)	165, 207, 322, 443
HpyCH4V	TGCA	8 cut(s)	45, 232, 257, 269, 281, 304, 320, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 556
HpyF3I	CTNAG	2 cut(s)	417, 1047
HpySE526I	ACGT	4 cut(s)	165, 207, 322, 443
Hsp92II	CATG	2 cut(s)	346, 491
Kzo9I	GATC	5 cut(s)	49, 695, 850, 1028, 1043
LmnI	GCTCC	2 cut(s)	5, 607
Lsp1109I	GCAGC	2 cut(s)	241, 439
LweI	GCATC	2 cut(s)	123, 546
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	4 cut(s)	165, 207, 322, 443
MaeIII	GTNAC	5 cut(s)	126, 172, 758, 965, 1038
MalI	GATC	5 cut(s)	51, 697, 852, 1030, 1045
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	5 cut(s)	49, 695, 850, 1028, 1043
MboII	GAAGA	7 cut(s)	25, 164, 459, 671, 674, 793, 964
MflI	RGATCY	2 cut(s)	49, 850
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	8 cut(s)	70, 227, 271, 369, 405, 476, 581, 703
MnlI	CCTC	9 cut(s)	24, 142, 257, 475, 570, 704, 829, 865, 1042
MseI	TTAA	3 cut(s)	597, 651, 735
MslI	CAYNNNNRTG	2 cut(s)	597, 735
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	3 cut(s)	376, 411, 929
MvaI	CCWGG	3 cut(s)	376, 411, 929
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	371, 556
NdeII	GATC	5 cut(s)	49, 695, 850, 1028, 1043
NlaIII	CATG	2 cut(s)	346, 491
NlaIV	GGNNCC	2 cut(s)	423, 819
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	2 cut(s)	758, 1038
NruI	TCGCGA	1 cut(s)	219
PfeI	GAWTC	4 cut(s)	80, 121, 390, 727
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	4 cut(s)	113, 256, 364, 429
Ppu21I	YACGTR	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	818
PsiI	TTATAA	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	374, 409, 927
PspGI	CCWGG	3 cut(s)	374, 409, 927
PspN4I	GGNNCC	2 cut(s)	423, 819
PspPI	GGNCC	2 cut(s)	191, 818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	49, 850
PvuII	CAGCTG	1 cut(s)	430
RruI	TCGCGA	1 cut(s)	219
RsaI	GTAC	3 cut(s)	245, 325, 905
RsaNI	GTAC	3 cut(s)	244, 324, 904
RseI	CAYNNNNRTG	2 cut(s)	597, 735
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	597, 651, 735
SatI	GCNGC	4 cut(s)	112, 255, 363, 428
Sau3AI	GATC	5 cut(s)	49, 695, 850, 1028, 1043
Sau96I	GGNCC	2 cut(s)	191, 818
ScrFI	CCNGG	3 cut(s)	376, 411, 929
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	123, 546
SfcI	CTRYAG	2 cut(s)	255, 763
SinI	GGWCC	1 cut(s)	818
SmiMI	CAYNNNNRTG	2 cut(s)	597, 735
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	8 cut(s)	70, 227, 271, 369, 405, 476, 581, 703
SsiI	CCGC	4 cut(s)	8, 111, 363, 425
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	374, 409, 927
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	3 cut(s)	103, 142, 178
TaiI	ACGT	4 cut(s)	168, 210, 325, 446
TaqI	TCGA	2 cut(s)	96, 687
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	8 cut(s)	70, 227, 271, 369, 405, 476, 581, 703
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	2 cut(s)	114, 365
TfiI	GAWTC	4 cut(s)	80, 121, 390, 727
Tru1I	TTAA	3 cut(s)	597, 651, 735
Tru9I	TTAA	3 cut(s)	597, 651, 735
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	2 cut(s)	758, 1038
TseI	GCWGC	2 cut(s)	254, 427
Tsp45I	GTSAC	2 cut(s)	758, 1038
TspDTI	ATGAA	6 cut(s)	507, 552, 667, 753, 768, 801
TspRI	CASTG	1 cut(s)	612
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	818
XapI	RAATTY	4 cut(s)	70, 271, 405, 476
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.