Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Forward (+)

2825447 .. 2828787

Gene Structure 3341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG040700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGAGCGGTGAAGAACATCTGGAACGGGAGGGTGTCATCTGAAGCTCCAGATTGCTCTCAGATCCAAATCCCCACTTCTTCTCTCTCCGTCGACCCTTCCCTCCCTCTCCCCCAAATCACGCCGCTCATAACAGAGTTGTGCAAGGATCTTTTTGAGAAATGGTCAAATTTGGACGATTCTCGCTTCTCGGTCGAGACGGTTTCCGGCGGCATCACGAATCTGTTACTGAAGGCTACTGTGAATGAGGAAGATGGAAATGACGTGTCTGTAACAGTCAGATTGTATGGCCCTAACACCGATTACGTTATCAATCGCGAAAGAGAATTGCAGGCGATCAAGTACCTCTCGGCTGCAGGGTTTGGTGCAAATTTGCTTGCAGTTTTTGGAAATGGAATGGTGCAGTCGTTTATAAACGCACGTACACTTGTCCCATTAGACATGAGAAATCCAAAGCTGGCCGCCGAAATTGCCAGGGAACTACGCAGATTCCATCAGGTGGAAATTCCAGGTTCTAAGGAACCTCAGCTGTGGATTGACATGTTCAAGTTCTACGAGAAAGCCTCTTCTCTTGAATTTGATGACAGCGAGAAGCAGAAAATCTACAAAACTATTTCATTTAGTGAAGTTTACAATGAAATCGTTGAGCTCAAGGAATTGACTAGCCATTTTAATGCTCCAGTGGTTTTTTCTCACAATGACTTGCTTTCTGGAAATATAATGGTTAATGACGAAGAAGAGAAACTCTACTTCATTGATTTCGAGTATGGATCATACAATTACAGAGACTTTGACATCGGGAATCACTTTAATGAATATGCGGGCTATGAATGTGACTACAGCTTATACCCAACCAAGGATGAACAATATCATTTCTTCAGGCATTATTTGGGACCTGACAAACCACAGGAGGTATCAGACAAAGATCTGGAAGCTCTCTATGTTGAGGCAAATACATATATGTTAGCTTCGCACTTGTACTGGGCTTTATGGGGAATAGTCCAGGCGAAGTTTTCTCCAATCAAGTTTGATTATCTCGGTTACTTCTTCCTGCGATACAACGAATACAAAAAGCAGAAGGAAAAGTGCTTATCGTTGGCAAGATCATTCCTGTCACGATCTGAGGCAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

377

Amino Acids

43.41

Weight (kDa)

4.93

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	65 - 356	2.8e-93	Choline/ethanolamine kinase
APH	PF01636	86 - 272	1e-11	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	2 cut(s)	8, 127
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	318
AciI	CCGC	5 cut(s)	8, 125, 210, 462, 821
AclWI	GGATC	3 cut(s)	58, 156, 778
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	4 cut(s)	169, 370, 504, 575
AcuI	CTGAAG	3 cut(s)	63, 251, 862
AfaI	GTAC	3 cut(s)	344, 424, 980
AfiI	CCNNNNNNNGG	2 cut(s)	499, 856
AflIII	ACRYGT	2 cut(s)	264, 540
AgsI	TTSAA	2 cut(s)	547, 575
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	473, 508, 1002
AluBI	AGCT	7 cut(s)	47, 457, 529, 649, 843, 935, 968
AluI	AGCT	7 cut(s)	47, 457, 529, 649, 843, 935, 968
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	191, 780
AlwI	GGATC	3 cut(s)	58, 156, 778
AoxI	GGCC	2 cut(s)	289, 459
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	4 cut(s)	169, 370, 504, 575
AspS9I	GGNCC	2 cut(s)	290, 893
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	248, 501
BciT130I	CCWGG	3 cut(s)	475, 510, 1004
BcoDI	GTCTC	2 cut(s)	191, 780
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	2 cut(s)	354, 838
BglII	AGATCT	1 cut(s)	925
BisI	GCNGC	4 cut(s)	125, 211, 354, 462
BlsI	GCNGC	4 cut(s)	126, 212, 355, 463
Bme1390I	CCNGG	3 cut(s)	475, 510, 1004
Bme18I	GGWCC	1 cut(s)	893
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	290, 893
BmiI	GGNNCC	2 cut(s)	522, 894
BmrFI	CCNGG	3 cut(s)	475, 510, 1004
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	991
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	33, 663
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	635
BsaAI	YACGTR	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	474, 855
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 856
Bse1I	ACTGG	2 cut(s)	680, 986
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	475, 510, 1004
BseDI	CCNNGG	2 cut(s)	474, 855
BseGI	GGATG	1 cut(s)	865
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	499, 856
BseMII	CTCAG	3 cut(s)	74, 539, 1113
BseNI	ACTGG	2 cut(s)	680, 986
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	2 cut(s)	291, 461
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	416, 906
BslI	CCNNNNNNNGG	2 cut(s)	499, 856
BsmAI	GTCTC	2 cut(s)	191, 780
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	416, 906
BsnI	GGCC	2 cut(s)	291, 461
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
Bsp68I	TCGCGA	1 cut(s)	318
BspACI	CCGC	5 cut(s)	8, 125, 210, 462, 821
BspANI	GGCC	2 cut(s)	291, 461
BspCNI	CTCAG	3 cut(s)	73, 538, 1114
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	522, 894
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	3 cut(s)	58, 156, 778
BsrBI	CCGCTC	2 cut(s)	8, 127
BsrI	ACTGG	2 cut(s)	680, 986
BssECI	CCNNGG	2 cut(s)	474, 855
BssMI	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	3 cut(s)	475, 510, 1004
Bst4CI	ACNGT	3 cut(s)	202, 241, 277
Bst6I	CTCTTC	2 cut(s)	571, 732
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	4 cut(s)	333, 378, 459, 823
BstDEI	CTNAG	4 cut(s)	60, 516, 525, 1122
BstF5I	GGATG	1 cut(s)	865
BstFNI	CGCG	1 cut(s)	318
BstKTI	GATC	7 cut(s)	66, 151, 339, 773, 928, 1106, 1121
BstMAI	GTCTC	2 cut(s)	191, 780
BstMBI	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	470
BstNI	CCWGG	3 cut(s)	475, 510, 1004
BstNSI	RCATGY	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	473, 508, 1002
BstSFI	CTRYAG	2 cut(s)	354, 838
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	3 cut(s)	63, 148, 925
BstYI	RGATCY	3 cut(s)	63, 148, 925
BsuRI	GGCC	2 cut(s)	291, 461
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	865
BtsIMutI	CAGTG	1 cut(s)	687
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	333, 378, 459, 823
Cfr13I	GGNCC	2 cut(s)	290, 893
Csp6I	GTAC	3 cut(s)	343, 423, 979
CviAII	CATG	2 cut(s)	442, 541
CviQI	GTAC	3 cut(s)	343, 423, 979
DdeI	CTNAG	4 cut(s)	60, 516, 525, 1122
DpnI	GATC	7 cut(s)	65, 150, 338, 772, 927, 1105, 1120
DpnII	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	2 cut(s)	571, 732
EarI	CTCTTC	2 cut(s)	571, 732
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	893
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	3 cut(s)	63, 251, 862
EcoICRI	GAGCTC	1 cut(s)	649
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRII	CCWGG	3 cut(s)	473, 508, 1002
EcoT14I	CCWWGG	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	855
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	2 cut(s)	445, 544
FaqI	GGGAC	2 cut(s)	416, 906
FatI	CATG	2 cut(s)	441, 540
FauI	CCCGC	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	125, 211, 354, 462
FokI	GGATG	1 cut(s)	872
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	125, 211, 354, 462
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	4 cut(s)	125, 211, 354, 462
GsuI	CTGGAG	2 cut(s)	33, 663
HaeIII	GGCC	2 cut(s)	291, 461
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	2 cut(s)	445, 544
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	4 cut(s)	179, 220, 489, 802
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	3 cut(s)	94, 425, 631
Hpy188I	TCNGA	5 cut(s)	43, 63, 281, 919, 1123
Hpy8I	GTNNAC	3 cut(s)	94, 425, 631
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	108, 226, 1072
HpyCH4III	ACNGT	3 cut(s)	202, 241, 277
HpyCH4IV	ACGT	3 cut(s)	264, 306, 421
HpyCH4V	TGCA	6 cut(s)	144, 331, 356, 368, 380, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	470
HpyF3I	CTNAG	4 cut(s)	60, 516, 525, 1122
HpySE526I	ACGT	3 cut(s)	264, 306, 421
Hsp92II	CATG	2 cut(s)	445, 544
Kzo9I	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
LmnI	GCTCC	3 cut(s)	5, 52, 682
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	3 cut(s)	264, 306, 421
MaeIII	GTNAC	5 cut(s)	225, 271, 833, 1040, 1113
MalI	GATC	7 cut(s)	65, 150, 338, 772, 927, 1105, 1120
MbiI	CCGCTC	2 cut(s)	8, 127
MboI	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
MboII	GAAGA	8 cut(s)	25, 72, 263, 558, 746, 749, 868, 1039
MflI	RGATCY	3 cut(s)	63, 148, 925
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	8 cut(s)	169, 326, 370, 468, 504, 575, 656, 778
MseI	TTAA	3 cut(s)	672, 726, 810
MslI	CAYNNNNRTG	2 cut(s)	672, 810
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	3 cut(s)	475, 510, 1004
MvaI	CCWGG	3 cut(s)	475, 510, 1004
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	470
NdeII	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
NlaIII	CATG	2 cut(s)	445, 544
NlaIV	GGNNCC	2 cut(s)	522, 894
NmeAIII	GCCGAG	1 cut(s)	329
NmuCI	GTSAC	2 cut(s)	833, 1113
NruI	TCGCGA	1 cut(s)	318
NspI	RCATGY	1 cut(s)	544
PciI	ACATGT	1 cut(s)	540
PfeI	GAWTC	4 cut(s)	179, 220, 489, 802
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	126, 212, 355, 463
Ppu21I	YACGTR	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	893
PscI	ACATGT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	893
Psp6I	CCWGG	3 cut(s)	473, 508, 1002
PspGI	CCWGG	3 cut(s)	473, 508, 1002
PspN4I	GGNNCC	2 cut(s)	522, 894
PspPI	GGNCC	2 cut(s)	290, 893
PspPPI	RGGWCCY	1 cut(s)	893
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	3 cut(s)	63, 148, 925
PvuII	CAGCTG	1 cut(s)	529
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	3 cut(s)	344, 424, 980
RsaNI	GTAC	3 cut(s)	343, 423, 979
RseI	CAYNNNNRTG	2 cut(s)	672, 810
SacI	GAGCTC	1 cut(s)	651
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	672, 726, 810
SatI	GCNGC	4 cut(s)	125, 211, 354, 462
Sau3AI	GATC	7 cut(s)	63, 148, 336, 770, 925, 1103, 1118
Sau96I	GGNCC	2 cut(s)	290, 893
ScrFI	CCNGG	3 cut(s)	475, 510, 1004
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	2 cut(s)	354, 838
SinI	GGWCC	1 cut(s)	893
SmiMI	CAYNNNNRTG	2 cut(s)	672, 810
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	8 cut(s)	169, 326, 370, 468, 504, 575, 656, 778
SsiI	CCGC	5 cut(s)	8, 125, 210, 462, 821
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	3 cut(s)	473, 508, 1002
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	3 cut(s)	202, 241, 277
TaiI	ACGT	3 cut(s)	267, 309, 424
TaqI	TCGA	3 cut(s)	93, 195, 762
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	8 cut(s)	169, 326, 370, 468, 504, 575, 656, 778
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	3 cut(s)	127, 213, 464
TfiI	GAWTC	4 cut(s)	179, 220, 489, 802
Tru1I	TTAA	3 cut(s)	672, 726, 810
Tru9I	TTAA	3 cut(s)	672, 726, 810
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	2 cut(s)	833, 1113
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	833, 1113
TspDTI	ATGAA	6 cut(s)	606, 651, 742, 828, 843, 876
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	893
XapI	RAATTY	4 cut(s)	169, 370, 504, 575
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.