Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Reverse (-)

20721464 .. 20725447

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGAGGGGTGAAGAACATCTGGAACGCCATGGAAGTAGCTAAGCAAACTTCAGATTGCTCCACCTCTCAGATCCATTCTTCTTCTCTATCCGTCGACCCTTCGCTTCCCCTCTCTCACATCACGCCTCTGATAATAGAGTTGTGCAAGGATCTATTTAAGAAATGGTCAAATTTGGAGAATTCTCGCTTCTCTGTTGGGACAGTTTCTGGTGGCATCACAAATCTATTGCTGAAGGTGACTGTAAAGGAAGAGAATGGAAACGATGTGTCTGTAACAGTCAGATTGTATGGGCCTAACACCGAGTATGTCATCAATCGGGAACGGGAATTGCAGTCAATCAAATACCTCTCGGCTGCAGGATTTGGTGCAAATTTGCTTGGAGTATTCGGGAATGGGATGGTGCAATCTTTCATCAATGCCCGTACGTTAATCCCATCAGACATGAGAAATCCGAAGCTGGCTGCCGAAATTGCCAAGCAACTATGCAGATTTCATCAAGTGGAAATTCCAGGTTCTAAGGAACCCCAGCTGTGGAATGACTTGCTCAAGTTCTTTGAGAAAGCCTCTGCTCTTGAATTTGACGACAATGAGAAGCAGAAATTATATAAGACCATTTCATTTAGTGAAGTTCACAATGAAATTATTGAGCTGAAGGAATTGACTGGCCTTTTAAATTCTCCAGTGGTTTTCGCTCACAATGACTTGCTTTCTGGAAATATAATGGTTAATGATGAAGAAGATAAACTCTACTTGATTGATTTTGAGTATGGATCATACAATTATAGAGGCTTTGACATTGGGAATCACTTCAATGAATATGCAGGCTATGAATGTGACTTCACCTTATGCCCAAATAAGGACGAACAGTACCATTTCTTGAGGCATTATTTACAACCTGAGAATCCACATGAGGTATCTGAGAAAGATCTGGAAGCTCTCTATGTTGAGGAAAATACATACACGTTAGCCTCACACTTGTATTGGGCTTTATGGGGACTAATCCAGGCAAAGTTTTCTCCGATCAACTTTGATTATCTTGGTTATTTCTTCCTGCGATACAATGAATTCAAAAGGCAGAAGGAAAAATGCTTCTCGTTGGCAAGATCATTCCTCTCACGATCTCAGACATTAAACATGCACGCGCAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

385

Amino Acids

44.04

Weight (kDa)

5.45

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	1145
AclWI	GGATC	3 cut(s)	67, 159, 781
AcsI	RAATTY	7 cut(s)	172, 181, 373, 507, 578, 676, 1067
AcuI	CTGAAG	3 cut(s)	36, 254, 674
AfaI	GTAC	2 cut(s)	427, 872
AfiI	CCNNNNNNNGG	2 cut(s)	534, 859
AflIII	ACRYGT	1 cut(s)	963
AgsI	TTSAA	3 cut(s)	578, 814, 1072
AjnI	CCWGG	2 cut(s)	511, 1005
AluBI	AGCT	5 cut(s)	41, 460, 532, 652, 938
AluI	AGCT	5 cut(s)	41, 460, 532, 652, 938
AlwI	GGATC	3 cut(s)	67, 159, 781
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	293, 667
ApeKI	GCWGC	2 cut(s)	356, 464
ApoI	RAATTY	7 cut(s)	172, 181, 373, 507, 578, 676, 1067
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	1147
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	3 cut(s)	22, 250, 835
BbvI	GCAGC	2 cut(s)	343, 451
BccI	CCATC	2 cut(s)	394, 445
BciT130I	CCWGG	2 cut(s)	513, 1007
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	1 cut(s)	928
BisI	GCNGC	2 cut(s)	357, 465
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	2 cut(s)	358, 466
Bme1390I	CCNGG	2 cut(s)	513, 1007
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	513, 1007
BmsI	GCATC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	533, 901
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 859
Bse1I	ACTGG	2 cut(s)	670, 683
BseBI	CCWGG	2 cut(s)	513, 1007
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	534, 859
BseMII	CTCAG	4 cut(s)	83, 891, 912, 1139
BseNI	ACTGG	2 cut(s)	670, 683
BseXI	GCAGC	2 cut(s)	343, 451
BseYI	CCCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	1145
BshFI	GGCC	2 cut(s)	295, 669
BsiWI	CGTACG	1 cut(s)	425
BslFI	GGGAC	2 cut(s)	214, 1011
BslI	CCNNNNNNNGG	2 cut(s)	534, 859
BsmFI	GGGAC	2 cut(s)	214, 1011
BsnI	GGCC	2 cut(s)	295, 669
Bsp143I	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
Bsp1720I	GCTNAGC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	2 cut(s)	295, 669
BspCNI	CTCAG	4 cut(s)	82, 892, 913, 1138
BspFNI	CGCG	1 cut(s)	1145
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	361
BspPI	GGATC	3 cut(s)	67, 159, 781
BsrI	ACTGG	2 cut(s)	670, 683
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	2 cut(s)	513, 1007
Bst4CI	ACNGT	4 cut(s)	205, 244, 280, 870
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	462, 826, 1143
BstDEI	CTNAG	6 cut(s)	42, 69, 519, 900, 921, 1125
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	1145
BstHHI	GCGC	1 cut(s)	1147
BstKTI	GATC	7 cut(s)	75, 154, 776, 931, 1026, 1109, 1124
BstMBI	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
BstMWI	GCNNNNNNNGC	1 cut(s)	473
BstNI	CCWGG	2 cut(s)	513, 1007
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	2 cut(s)	511, 1005
BstSFI	CTRYAG	1 cut(s)	357
BstUI	CGCG	1 cut(s)	1145
BstV1I	GCAGC	2 cut(s)	343, 451
BstX2I	RGATCY	3 cut(s)	72, 151, 928
BstYI	RGATCY	3 cut(s)	72, 151, 928
BsuRI	GGCC	2 cut(s)	295, 669
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	690
Cac8I	GCNNGC	3 cut(s)	462, 826, 1143
CaiI	CAGNNNCTG	1 cut(s)	209
CfoI	GCGC	1 cut(s)	1147
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	426, 871
CviAII	CATG	4 cut(s)	31, 445, 911, 1138
CviQI	GTAC	2 cut(s)	426, 871
DdeI	CTNAG	6 cut(s)	42, 69, 519, 900, 921, 1125
DpnI	GATC	7 cut(s)	74, 153, 775, 930, 1025, 1108, 1123
DpnII	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
DraI	TTTAAA	1 cut(s)	675
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	30
Eco57I	CTGAAG	3 cut(s)	36, 254, 674
EcoRI	GAATTC	2 cut(s)	181, 1067
EcoRII	CCWGG	2 cut(s)	511, 1005
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	34, 448, 914, 1141
FaqI	GGGAC	2 cut(s)	214, 1011
FatI	CATG	4 cut(s)	30, 444, 910, 1137
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	357, 465
FokI	GGATG	1 cut(s)	412
Fsp4HI	GCNGC	2 cut(s)	357, 465
GlaI	GCGC	1 cut(s)	1146
GluI	GCNGC	2 cut(s)	357, 465
GsaI	CCCAGC	1 cut(s)	532
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	295, 669
HhaI	GCGC	1 cut(s)	1147
Hin1II	CATG	4 cut(s)	34, 448, 914, 1141
Hin6I	GCGC	1 cut(s)	1145
HinP1I	GCGC	1 cut(s)	1145
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	805, 904
HphI	GGTGA	3 cut(s)	22, 250, 835
Hpy166II	GTNNAC	2 cut(s)	97, 634
Hpy188I	TCNGA	9 cut(s)	55, 72, 132, 284, 442, 456, 922, 1023, 1128
Hpy188III	TCNNGA	8 cut(s)	22, 320, 391, 575, 714, 880, 932, 1119
Hpy8I	GTNNAC	2 cut(s)	97, 634
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	111, 229, 649, 1075
HpyCH4III	ACNGT	4 cut(s)	205, 244, 280, 870
HpyCH4IV	ACGT	2 cut(s)	428, 965
HpyCH4V	TGCA	8 cut(s)	147, 334, 359, 371, 406, 489, 824, 1141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	473
HpyF3I	CTNAG	6 cut(s)	42, 69, 519, 900, 921, 1125
HpySE526I	ACGT	2 cut(s)	428, 965
Hsp92II	CATG	4 cut(s)	34, 448, 914, 1141
HspAI	GCGC	1 cut(s)	1145
Kzo9I	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	2 cut(s)	343, 451
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	2 cut(s)	428, 965
MaeIII	GTNAC	3 cut(s)	238, 274, 836
MalI	GATC	7 cut(s)	74, 153, 775, 930, 1025, 1108, 1123
MboI	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
MboII	GAAGA	7 cut(s)	25, 72, 75, 263, 749, 752, 1042
MflI	RGATCY	3 cut(s)	72, 151, 928
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	5 cut(s)	159, 431, 674, 729, 1133
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	513, 1007
MvaI	CCWGG	2 cut(s)	513, 1007
MvnI	CGCG	1 cut(s)	1145
MwoI	GCNNNNNNNGC	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
NlaIII	CATG	4 cut(s)	34, 448, 914, 1141
NlaIV	GGNNCC	1 cut(s)	525
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	2 cut(s)	238, 836
NspI	RCATGY	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	805, 904
Pfl23II	CGTACG	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	358, 466
Psp6I	CCWGG	2 cut(s)	511, 1005
PspFI	CCCAGC	1 cut(s)	528
PspGI	CCWGG	2 cut(s)	511, 1005
PspLI	CGTACG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	72, 151, 928
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	2 cut(s)	427, 872
RsaNI	GTAC	2 cut(s)	426, 871
RseI	CAYNNNNRTG	1 cut(s)	813
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	159, 431, 674, 729, 1133
SatI	GCNGC	2 cut(s)	357, 465
Sau3AI	GATC	7 cut(s)	72, 151, 773, 928, 1023, 1106, 1121
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	513, 1007
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	548, 880
SmoI	CTYRAG	2 cut(s)	548, 880
StyD4I	CCNGG	2 cut(s)	511, 1005
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	4 cut(s)	205, 244, 280, 870
TaiI	ACGT	2 cut(s)	431, 968
TaqI	TCGA	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	805, 904
Tru1I	TTAA	5 cut(s)	159, 431, 674, 729, 1133
Tru9I	TTAA	5 cut(s)	159, 431, 674, 729, 1133
TscAI	CASTG	1 cut(s)	690
TseFI	GTSAC	2 cut(s)	238, 836
TseI	GCWGC	2 cut(s)	356, 464
Tsp45I	GTSAC	2 cut(s)	238, 836
TspDTI	ATGAA	8 cut(s)	403, 485, 609, 654, 750, 831, 846, 1080
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	690
XapI	RAATTY	7 cut(s)	172, 181, 373, 507, 578, 676, 1067
XceI	RCATGY	1 cut(s)	1141
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.