Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Reverse (-)

3220304 .. 3222102

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGACACTGGTCCCTACTCCCTACTATTCACAGAAGTCCCCAAGCTCTTTCCTTTGGCTCTCTCTGCTTTCTTCCTCAGCAACAACCGTGAGAGCTTTTGTGACCCCAATTTCACAGCTTTCCTTCTTCCTCTGCACTCTCACATTCCGGTTGGCGATCAAGTACCTCTCGGCTGCAGGGTTTGGTGCAAATTTGCTTGCAGTTTTTGGAAATGGAATGGTGCAGTCGTTTATAAATGCACGTACACTTGTCCCATTAGGGTTCTTGGTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

91

Amino Acids

9.87

Weight (kDa)

10.18

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	2 cut(s)	164, 244
AluBI	AGCT	3 cut(s)	45, 95, 118
AluI	AGCT	3 cut(s)	45, 95, 118
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	12
BoxI	GACNNNNGTC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	76
BsaAI	YACGTR	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	2 cut(s)	118, 242
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	22, 236
BsmFI	GGGAC	2 cut(s)	22, 236
Bsp143I	GATC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	163, 243
CviJI	RGCY	5 cut(s)	45, 58, 95, 118, 173
CviKI_1	RGCY	5 cut(s)	45, 58, 95, 118, 173
CviQI	GTAC	2 cut(s)	163, 243
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	10
FaiI	YATR	1 cut(s)	233
FaqI	GGGAC	2 cut(s)	22, 236
Fnu4HI	GCNGC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	148
HpaII	CCGG	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	245, 271
Hpy8I	GTNNAC	2 cut(s)	245, 271
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	6 cut(s)	135, 176, 188, 200, 223, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	161, 162
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	63, 118
MluCI	AATT	2 cut(s)	108, 190
MnlI	CCTC	3 cut(s)	85, 140, 176
MspI	CCGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	175
Ppu21I	YACGTR	1 cut(s)	242
PshAI	GACNNNNGTC	1 cut(s)	8
PsiI	TTATAA	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	164, 244
RsaNI	GTAC	2 cut(s)	163, 243
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	10
SetI	ASST	5 cut(s)	47, 97, 120, 168, 244
SfcI	CTRYAG	1 cut(s)	174
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	2 cut(s)	108, 190
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	244
TasI	AATT	2 cut(s)	108, 190
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.