Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011379

Physical Location & Seq

Genomic Coordinates Forward (+)

3189017 .. 3194946

Gene Structure 5930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCTCGGTTTCTTCCTGAAAACGTTGCGCTTGAAAATCGAAGCAAAAAAAGGGAAAAGAAAAAAAATTAAAAAAAAAATTCAAAAACGAGAAGAAGAAAAATCGTTGAAGGTGAAAATGGGAGCGGTGAAGAACATCTGGAACGAGAGGGAAGTAGCTGAAGCTCCAGATTGCTCTCAGATCCAAATCCCCACTTCTTCTCTCTCCGTCGACCCTTCCCTCCCTCTCCCCCAAATCACGCCGCTCATAACAGAGTTGTGCAAGGATCTTTTTGAGAAATGGTCAAATTTGGACGATTCTCGCTTCTCGGTCGAGACGGTTTCCGGCGGCATCACGAATCTGTTACTGAAGGCTACTGCGAAGGAGGAAGGTGGAAATGACGTGTCTGTAACAGTCAGATTGTATGGCCCTAACACCGATTACGTTATCAATCGCGAAAGAGAATTGCAGGCGATCAAGTACCTCTCGGCCGCAGGGTTTGGTGCAAATTTGCTTGCAGTTTTTGGAAATGGAATGGTGCAGTCGTTTATAAATGCACGTACACTTGTCCCATTAGACATGAGAAATCCAAAGCTGGCCGCCGAAATTGCGAGGGAACTACGCAGATTCCATCAGGTGGAAATTCCAGGTTCTAAGGAACCTCAGCTGTGGATTGACATGTTCAAGTTCTACGAGAAAGCCTCTTCTCTTGAATTTGATGACAGCGAGAAGCAGAAAATCTACAAAACTATTTCATTTAGTGAAGTTTACAATGAAATCGTTGAGCTCAAGGAATTGACTAGCCATTTTAATGCTCCGGTGGTTTTTTCTCACAATGACTTGCTTTCTGGAAATATAATGGCTAATGATGAGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0016020 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044464 GO:0071704 GO:0071944 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 map00564 map01100

Pfam Domains

Protein Families

Choline_kinase

Protein Analysis

286

Amino Acids

32.39

Weight (kDa)

8.33

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Choline_kinase	PF01633	104 - 284	2.9e-48	Choline/ethanolamine kinase
APH	PF01636	106 - 282	9e-06	Phosphotransferase enzyme family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26830
fragaria_vesca	FvH4_1g03540
malus_domestica	MD02G1034500.v1.1 MD15G1175300.v1.1
prunus_persica	Prupe.7G240800_v2.0.a1 Prupe.7G240800_v2.0.a1
pyrus_communis	pycom02g02820 pycom15g15670
rosa_chinensis	RchiOBHm_Chr2g0088751 RchiOBHm_Chr2g0088811 RchiOBHm_Chr2g0088821 RchiOBHm_Chr2g0088981 RchiOBHm_Chr2g0089031
rosa_laevigata	RLG00000015984
rosa_multiflora	Rmu_sc0005510.1_g000010
rosa_roxburghii	Rroxscaffold_2G00152330
rosa_rugosa	Rorug01G0486700
rosa_samantha	Rh2BG040700 Rh2CG042300
rosa_wichuraiana	Rw2G003530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccBSI	CCGCTC	2 cut(s)	125, 244
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	435
AciI	CCGC	5 cut(s)	125, 242, 327, 471, 579
AclI	AACGTT	1 cut(s)	23
AclWI	GGATC	2 cut(s)	175, 273
AcoI	YGGCCR	2 cut(s)	468, 576
AcsI	RAATTY	5 cut(s)	78, 286, 487, 621, 692
AcuI	CTGAAG	2 cut(s)	180, 368
AfaI	GTAC	2 cut(s)	461, 541
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflIII	ACRYGT	2 cut(s)	381, 657
AgsI	TTSAA	5 cut(s)	34, 83, 109, 664, 692
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	158, 164, 574, 646, 766
AluI	AGCT	5 cut(s)	158, 164, 574, 646, 766
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	175, 273
AoxI	GGCC	3 cut(s)	406, 468, 576
ApoI	RAATTY	5 cut(s)	78, 286, 487, 621, 692
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	124, 139
BanII	GRGCYC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	768
BbvCI	CCTCAGC	1 cut(s)	642
BccI	CCATC	1 cut(s)	618
BciT130I	CCWGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	780
BisI	GCNGC	4 cut(s)	242, 328, 471, 579
BlsI	GCNGC	4 cut(s)	243, 329, 472, 580
Bme1390I	CCNGG	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	627
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	2 cut(s)	191, 656
BseX3I	CGGCCG	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	435
Bsh1285I	CGRYCG	2 cut(s)	312, 471
BshFI	GGCC	3 cut(s)	408, 470, 578
BsiEI	CGRYCG	2 cut(s)	312, 471
BsiHKAI	GWGCWC	1 cut(s)	768
BsiSI	CCGG	2 cut(s)	324, 797
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	308
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	3 cut(s)	408, 470, 578
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	3 cut(s)	180, 265, 453
Bsp68I	TCGCGA	1 cut(s)	435
BspACI	CCGC	5 cut(s)	125, 242, 327, 471, 579
BspANI	GGCC	3 cut(s)	408, 470, 578
BspCNI	CTCAG	2 cut(s)	190, 655
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	2 cut(s)	175, 273
BsrBI	CCGCTC	2 cut(s)	125, 244
BssMI	GATC	3 cut(s)	180, 265, 453
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	2 cut(s)	319, 394
Bst6I	CTCTTC	1 cut(s)	688
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	450, 495, 576
BstDEI	CTNAG	3 cut(s)	177, 633, 642
BstFNI	CGCG	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	183, 268, 456
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	180, 265, 453
BstMCI	CGRYCG	2 cut(s)	312, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	1 cut(s)	625
BstUI	CGCG	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	180, 265
BstYI	RGATCY	2 cut(s)	180, 265
BstZI	CGGCCG	1 cut(s)	468
BsuRI	GGCC	3 cut(s)	408, 470, 578
BtrI	CACGTC	1 cut(s)	382
BtuMI	TCGCGA	1 cut(s)	435
Cac8I	GCNNGC	3 cut(s)	450, 495, 576
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	460, 540
CviAII	CATG	2 cut(s)	559, 658
CviQI	GTAC	2 cut(s)	460, 540
DdeI	CTNAG	3 cut(s)	177, 633, 642
DpnI	GATC	3 cut(s)	182, 267, 455
DpnII	GATC	3 cut(s)	180, 265, 453
EaeI	YGGCCR	2 cut(s)	468, 576
EagI	CGGCCG	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
Ecl136II	GAGCTC	1 cut(s)	766
EclXI	CGGCCG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	768
Eco52I	CGGCCG	1 cut(s)	468
Eco53kI	GAGCTC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	180, 368
EcoICRI	GAGCTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	562, 661
FaiI	YATR	7 cut(s)	248, 405, 530, 560, 659, 836, 859
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	2 cut(s)	558, 657
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	242, 328, 471, 579
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	4 cut(s)	242, 328, 471, 579
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	242, 328, 471, 579
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	408, 470, 578
HapII	CCGG	2 cut(s)	324, 797
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	562, 661
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	296, 337, 606
HpaII	CCGG	2 cut(s)	324, 797
HphI	GGTGA	2 cut(s)	124, 139
Hpy166II	GTNNAC	3 cut(s)	211, 542, 748
Hpy188I	TCNGA	2 cut(s)	180, 398
Hpy188III	TCNNGA	8 cut(s)	16, 139, 167, 313, 334, 434, 689, 828
Hpy8I	GTNNAC	3 cut(s)	211, 542, 748
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	103, 225, 343, 355, 362
HpyCH4III	ACNGT	2 cut(s)	319, 394
HpyCH4IV	ACGT	4 cut(s)	23, 381, 423, 538
HpyCH4V	TGCA	6 cut(s)	261, 448, 485, 497, 520, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	3 cut(s)	177, 633, 642
HpySE526I	ACGT	4 cut(s)	23, 381, 423, 538
Hsp92II	CATG	2 cut(s)	562, 661
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	180, 265, 453
LmnI	GCTCC	3 cut(s)	122, 169, 799
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	4 cut(s)	23, 381, 423, 538
MaeIII	GTNAC	2 cut(s)	342, 388
MalI	GATC	3 cut(s)	182, 267, 455
MbiI	CCGCTC	2 cut(s)	125, 244
MboI	GATC	3 cut(s)	180, 265, 453
MboII	GAAGA	6 cut(s)	4, 104, 107, 142, 189, 675
MflI	RGATCY	2 cut(s)	180, 265
MhlI	GDGCHC	1 cut(s)	768
MluCI	AATT	9 cut(s)	66, 78, 286, 443, 487, 585, 621, 692, 773
MnlI	CCTC	8 cut(s)	141, 230, 234, 358, 473, 585, 651, 691
MseI	TTAA	2 cut(s)	69, 789
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	2 cut(s)	324, 797
MspR9I	CCNGG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	587
NdeII	GATC	3 cut(s)	180, 265, 453
NlaIII	CATG	2 cut(s)	562, 661
NlaIV	GGNNCC	1 cut(s)	639
NmeAIII	GCCGAG	1 cut(s)	446
NruI	TCGCGA	1 cut(s)	435
NspI	RCATGY	1 cut(s)	661
PciI	ACATGT	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	296, 337, 606
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	243, 329, 472, 580
Ppu21I	YACGTR	1 cut(s)	539
PscI	ACATGT	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	768
Psp1406I	AACGTT	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	180, 265
PvuII	CAGCTG	1 cut(s)	646
RruI	TCGCGA	1 cut(s)	435
RsaI	GTAC	2 cut(s)	461, 541
RsaNI	GTAC	2 cut(s)	460, 540
RseI	CAYNNNNRTG	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	768
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	69, 789
SatI	GCNGC	4 cut(s)	242, 328, 471, 579
Sau3AI	GATC	3 cut(s)	180, 265, 453
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	9 cut(s)	66, 78, 286, 443, 487, 585, 621, 692, 773
SsiI	CCGC	5 cut(s)	125, 242, 327, 471, 579
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	768
StyD4I	CCNGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	319, 394
TaiI	ACGT	4 cut(s)	26, 384, 426, 541
TaqI	TCGA	3 cut(s)	39, 210, 312
TaqII	GACCGA	1 cut(s)	298
TasI	AATT	9 cut(s)	66, 78, 286, 443, 487, 585, 621, 692, 773
TauI	GCSGC	4 cut(s)	244, 330, 473, 581
TfiI	GAWTC	3 cut(s)	296, 337, 606
Tru1I	TTAA	2 cut(s)	69, 789
Tru9I	TTAA	2 cut(s)	69, 789
TspDTI	ATGAA	2 cut(s)	723, 768
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	616
XapI	RAATTY	5 cut(s)	78, 286, 487, 621, 692
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.